Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021334
         (463 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17A5.02c |dbr1||RNA lariat debranching enzyme Dbr1 |Schizosa...    26   2.4  
SPCC1840.05c |||phosphomannomutase |Schizosaccharomyces pombe|ch...    26   3.2  
SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|ch...    25   4.3  
SPCC1259.08 |||conserved fungal protein|Schizosaccharomyces pomb...    25   4.3  
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo...    25   5.6  
SPCC594.07c |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    25   5.6  
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa...    25   7.4  

>SPAC17A5.02c |dbr1||RNA lariat debranching enzyme Dbr1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 466

 Score = 26.2 bits (55), Expect = 2.4
 Identities = 8/22 (36%), Positives = 18/22 (81%)
 Frame = -1

Query: 310 VACSSRDILSAFYRVAGIDQPS 245
           ++CSS+D+ S+ + + G+++PS
Sbjct: 255 LSCSSKDVTSSGFSMKGLNEPS 276


>SPCC1840.05c |||phosphomannomutase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 587

 Score = 25.8 bits (54), Expect = 3.2
 Identities = 14/58 (24%), Positives = 26/58 (44%)
 Frame = +3

Query: 183 LDYQVTHRDNLWCALQCVPAVDGWSIPATL*KALRMSRDEQATCLLQRFLYQGYKSHG 356
           L Y+    + +   L   P  D ++    +  A R    ++  C+L  F++Q YK+ G
Sbjct: 289 LAYEQADANGISYVLATDPDADRFAFAEKINGAWRRFTGDEVGCILAYFIFQEYKNVG 346


>SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 642

 Score = 25.4 bits (53), Expect = 4.3
 Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
 Frame = +1

Query: 217 GVPCSAYQQWMAGLFPLPCRKHSECRV--MSKQHVCCNGFCTK 339
           G+PC+A    ++G    P    SE RV  + KQ +  NG   K
Sbjct: 191 GIPCTAVTANLSGQLKTPWALASELRVSHLFKQALISNGLKVK 233


>SPCC1259.08 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 394

 Score = 25.4 bits (53), Expect = 4.3
 Identities = 12/42 (28%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
 Frame = -3

Query: 359 GAVAFIPLVQKPLQQTCCLLI--TRHSECFLQGSGNRPAIHC 240
           G V F  L  KP  +   +    +R S C +  +  R ++HC
Sbjct: 56  GRVTFAVLPTKPKDEVTSMKANGSRQSSCIVSNARKRQSVHC 97


>SPCC18.03 |||shuttle craft like transcriptional
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1077

 Score = 25.0 bits (52), Expect = 5.6
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = +1

Query: 268 PCRKHSECRVMSKQHVCCNGFCTKGIKAT 354
           PC K   C     QH+C  G C + ++A+
Sbjct: 588 PCNKKLSCGNHFCQHMCHRGPCPRCLEAS 616


>SPCC594.07c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 255

 Score = 25.0 bits (52), Expect = 5.6
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +2

Query: 206 GQSVVCPAVRTSSGWLVYSRYPV 274
           GQS++        GWL+ ++YPV
Sbjct: 62  GQSLLLQKFNLGYGWLLLTKYPV 84


>SPCC584.04 |sup35|erf3|translation release factor eRF3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 662

 Score = 24.6 bits (51), Expect = 7.4
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +1

Query: 328 FCTKGIKATAPLQSTTPV 381
           F TKG+K  A L++ TPV
Sbjct: 612 FATKGMKIIAELETQTPV 629


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,781,301
Number of Sequences: 5004
Number of extensions: 34456
Number of successful extensions: 108
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 174340060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)