Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021334
         (463 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0401 - 3108477-3108689,3108787-3108933,3109022-3109234,310...    30   1.0  
12_01_1092 - 11362094-11362367,11362739-11362795,11363256-113636...    27   5.6  
11_06_0014 - 19267601-19267831,19268338-19268454,19268733-192688...    27   7.3  
01_01_0323 + 2598850-2598924,2599756-2600844,2601352-2602589,260...    27   7.3  
12_01_0022 + 165056-165408,165477-165624,166248-166248,166305-16...    27   9.7  

>03_01_0401 -
           3108477-3108689,3108787-3108933,3109022-3109234,
           3109321-3109938,3110045-3110584,3110941-3111041,
           3111208-3111325,3111450-3111535,3111888-3112002
          Length = 716

 Score = 29.9 bits (64), Expect = 1.0
 Identities = 12/34 (35%), Positives = 23/34 (67%)
 Frame = +2

Query: 50  DAQTSSLNLKYHLLRKVFSNILDVLVMINEMHRP 151
           D    SL+LK+H+++ V +NIL  +++ N  ++P
Sbjct: 555 DKWNGSLSLKWHIVKDVPNNILKHIILENNENKP 588


>12_01_1092 -
           11362094-11362367,11362739-11362795,11363256-11363683,
           11364350-11365462
          Length = 623

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +1

Query: 49  RRSDLLIKFKVPFTSKSIFEYFGCVSHD 132
           +RS L+ K KV      + + F CVSHD
Sbjct: 280 KRSQLMKKLKVYIVVADVSKAFDCVSHD 307


>11_06_0014 -
           19267601-19267831,19268338-19268454,19268733-19268890,
           19269501-19269612,19269721-19269908,19270344-19270436,
           19270521-19270708,19271635-19271720,19272662-19272811,
           19273930-19274065,19274143-19274222,19275546-19275626,
           19276114-19276245,19276490-19276610,19277457-19277518,
           19277846-19277974,19278514-19278573,19278689-19278772,
           19278852-19279532
          Length = 962

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +2

Query: 47  SDAQTSSLNLKYHLLRKVFSNILDVLV 127
           SDAQT   N    +   VFS++LD L+
Sbjct: 349 SDAQTEKRNAAQEIFSPVFSSLLDALL 375


>01_01_0323 +
           2598850-2598924,2599756-2600844,2601352-2602589,
           2602637-2602810,2603032-2603098,2603735-2603757,
           2603899-2604001,2604087-2604848,2605098-2605292,
           2605496-2606115,2606429-2606480,2606558-2607197,
           2608366-2608574,2608660-2609189,2609500-2609566,
           2609651-2609728,2610415-2610483,2610569-2610643
          Length = 2021

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +3

Query: 216 WCALQCVPAVDGWSIP 263
           W  LQC+ A++GW  P
Sbjct: 541 WLILQCLKAIEGWLAP 556


>12_01_0022 +
           165056-165408,165477-165624,166248-166248,166305-166602,
           166819-167387,167554-168377
          Length = 730

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 19/79 (24%), Positives = 35/79 (44%), Gaps = 4/79 (5%)
 Frame = -2

Query: 234 RTAGHTTDCPCALLDNPAKITKINNA----TEGLCISLIMTNTSKIFENTFRSKWYFKFN 67
           R AG T+D P A+   P  +T  +      T+G  + L+  ++   F        +F+FN
Sbjct: 186 RGAGDTSDHPAAIA-RPQDVTTFHIVGVVDTDGARVRLLFRDSDLYFVAFKTGSCWFRFN 244

Query: 66  EEV*ASLMAVRWPLMLANG 10
           +E   + +    P+   +G
Sbjct: 245 DEHIPTFLTPTVPIAYTSG 263


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,151,616
Number of Sequences: 37544
Number of extensions: 238922
Number of successful extensions: 633
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 606
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 633
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 919380308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)