Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021334
         (463 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_22334| Best HMM Match : VAR1 (HMM E-Value=1.9)                      31   0.46 
SB_12834| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.61 
SB_384| Best HMM Match : IBR (HMM E-Value=1.1e-12)                     31   0.61 
SB_4300| Best HMM Match : EGF_CA (HMM E-Value=3.7)                     29   1.9  
SB_48083| Best HMM Match : UPF0153 (HMM E-Value=3.8)                   29   2.5  
SB_45463| Best HMM Match : zf-C2H2 (HMM E-Value=0)                     28   3.3  
SB_4487| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   3.3  
SB_33669| Best HMM Match : EMP70 (HMM E-Value=3.9e-11)                 28   4.3  
SB_27219| Best HMM Match : Cad (HMM E-Value=4)                         28   4.3  
SB_34780| Best HMM Match : Pox_A32 (HMM E-Value=0.018)                 27   5.7  
SB_12895| Best HMM Match : C1_3 (HMM E-Value=0.03)                     27   7.6  
SB_21285| Best HMM Match : EGF_CA (HMM E-Value=1.3e-37)                27   10.0 

>SB_22334| Best HMM Match : VAR1 (HMM E-Value=1.9)
          Length = 525

 Score = 31.1 bits (67), Expect = 0.46
 Identities = 17/45 (37%), Positives = 26/45 (57%)
 Frame = -2

Query: 231 TAGHTTDCPCALLDNPAKITKINNATEGLCISLIMTNTSKIFENT 97
           T+G T  C   ++DN + + K  + T   C+S +M NTS + ENT
Sbjct: 441 TSG-TYQCLSNVMDNNSSLAKYTSGTYQ-CLSNVMDNTSSLEENT 483



 Score = 29.1 bits (62), Expect = 1.9
 Identities = 13/36 (36%), Positives = 22/36 (61%)
 Frame = -2

Query: 204 CALLDNPAKITKINNATEGLCISLIMTNTSKIFENT 97
           C ++DN + + +  + T   C+S +M NTS + ENT
Sbjct: 386 CYVMDNTSSLAENTSGTYQ-CLSNVMDNTSSLEENT 420



 Score = 27.1 bits (57), Expect = 7.6
 Identities = 14/48 (29%), Positives = 23/48 (47%)
 Frame = -2

Query: 240 LVRTAGHTTDCPCALLDNPAKITKINNATEGLCISLIMTNTSKIFENT 97
           L      T  C   ++DN + + +  + T   C+S +M N S + ENT
Sbjct: 395 LAENTSGTYQCLSNVMDNTSSLEENTSGTYQ-CLSNVMDNNSSLEENT 441


>SB_12834| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1261

 Score = 30.7 bits (66), Expect = 0.61
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = +1

Query: 199 RTGTICGVPCSAYQQWMAGLFPLPCRKHSEC 291
           RTG +CG     Y +    LF   CR+H EC
Sbjct: 789 RTGLLCGACAEGYTE---SLFGTQCRRHEEC 816


>SB_384| Best HMM Match : IBR (HMM E-Value=1.1e-12)
          Length = 259

 Score = 30.7 bits (66), Expect = 0.61
 Identities = 17/49 (34%), Positives = 22/49 (44%)
 Frame = -3

Query: 368 LCNGAVAFIPLVQKPLQQTCCLLITRHSECFLQGSGNRPAIHCWYALQG 222
           L NG    + +   P   TC +LI R   C     GN   I CW+ L+G
Sbjct: 172 LVNGEEVLVEIKACP---TCQVLIQRDEGCAQMMCGNCKHIFCWHCLKG 217


>SB_4300| Best HMM Match : EGF_CA (HMM E-Value=3.7)
          Length = 102

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 13/36 (36%), Positives = 22/36 (61%)
 Frame = -2

Query: 204 CALLDNPAKITKINNATEGLCISLIMTNTSKIFENT 97
           C ++DN + + +  + T   C+S +M NTS + ENT
Sbjct: 17  CYVMDNTSSLAENTSGTYQ-CLSNVMDNTSSLEENT 51



 Score = 27.5 bits (58), Expect = 5.7
 Identities = 14/48 (29%), Positives = 23/48 (47%)
 Frame = -2

Query: 240 LVRTAGHTTDCPCALLDNPAKITKINNATEGLCISLIMTNTSKIFENT 97
           L      T  C   ++DN + + +  + T   C+S +M N S + ENT
Sbjct: 26  LAENTSGTYQCLSNVMDNTSSLEENTSGTYQ-CLSNVMDNNSSLAENT 72


>SB_48083| Best HMM Match : UPF0153 (HMM E-Value=3.8)
          Length = 87

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = -1

Query: 304 CSS-RDILSAFYRVAGIDQPSTAGTHCRAHHRLSLCV 197
           CS  +D++  + R  G+D  ST GT C     L+ C+
Sbjct: 16  CSKLKDLIRGYERKLGLDGNSTDGTKCHIFGPLNFCL 52


>SB_45463| Best HMM Match : zf-C2H2 (HMM E-Value=0)
          Length = 347

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 11/32 (34%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = +1

Query: 295 VMSKQHVCCNGFCTKGI-KATAPLQSTTPVQI 387
           V SK++ CC+ FC  G+ + T P     P+++
Sbjct: 7   VKSKKNSCCSSFCEDGVAELTTPPSLWEPIRV 38


>SB_4487| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 251

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = -2

Query: 225 GHTTDCPCALLDNPAKITKINNATEGLCISLIMTNTSK 112
           G     P +L   P K  + +  T+GL ++ ++TNTSK
Sbjct: 162 GEVVQEPPSLTAKPRKAKQESQGTKGLLLNKMLTNTSK 199


>SB_33669| Best HMM Match : EMP70 (HMM E-Value=3.9e-11)
          Length = 809

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 5/48 (10%)
 Frame = +1

Query: 211 ICGVP-CSAYQQWMAGLFPLP-CRKHSE---CRVMSKQHVCCNGFCTK 339
           +C +P CSA+  ++ GL P+  C    E   C++  K+ V C   CTK
Sbjct: 492 VCLLPGCSAF--YLPGLAPVSYCESSKEQDGCKLSFKKEVKCETLCTK 537


>SB_27219| Best HMM Match : Cad (HMM E-Value=4)
          Length = 297

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +3

Query: 318 LQRFLYQGYKSHGTITKHNPRSDP 389
           L RFL+QGYK    +T    RS+P
Sbjct: 202 LFRFLFQGYKERRLVTPLRNRSEP 225


>SB_34780| Best HMM Match : Pox_A32 (HMM E-Value=0.018)
          Length = 625

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 12/38 (31%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = -3

Query: 308 CLLITRHSECFLQG-SGNRPAIHCWYALQGTPQIVPVR 198
           C++   + E  L+G +   PA+ CW A +  P+  P R
Sbjct: 318 CMMSDEYFESLLEGGAAGLPAVECWTARRILPERQPER 355


>SB_12895| Best HMM Match : C1_3 (HMM E-Value=0.03)
          Length = 1832

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 18/55 (32%), Positives = 27/55 (49%)
 Frame = -2

Query: 198  LLDNPAKITKINNATEGLCISLIMTNTSKIFENTFRSKWYFKFNEEV*ASLMAVR 34
            +L+  A +T  N    GL +SL  +NT K  ++    K   K NEE    ++A R
Sbjct: 954  VLEESASLTSANR--RGLPVSLYSSNTGKTPDSCTELKGSDKHNEEQSGRMLAER 1006


>SB_21285| Best HMM Match : EGF_CA (HMM E-Value=1.3e-37)
          Length = 517

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = -1

Query: 271 RVAGIDQPSTAGTHCRAHHR 212
           R A +DQPS++GT  R  HR
Sbjct: 472 RAAELDQPSSSGTTNRLRHR 491


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,991,530
Number of Sequences: 59808
Number of extensions: 279402
Number of successful extensions: 712
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 638
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 712
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 945255773
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)