Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021334
         (463 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41534-3|AAB47595.1| 1119|Caenorhabditis elegans Hypothetical pr...    29   2.1  
Z83125-5|CAB05622.2|  362|Caenorhabditis elegans Hypothetical pr...    27   6.5  
AF040647-11|AAB94992.4|  270|Caenorhabditis elegans Hypothetical...    27   6.5  

>U41534-3|AAB47595.1| 1119|Caenorhabditis elegans Hypothetical
           protein C16A3.7 protein.
          Length = 1119

 Score = 28.7 bits (61), Expect = 2.1
 Identities = 19/46 (41%), Positives = 20/46 (43%), Gaps = 5/46 (10%)
 Frame = +1

Query: 199 RTGTICGV-PCSAYQQWMAG----LFPLPCRKHSECRVMSKQHVCC 321
           R GT  GV PC  Y Q M      L    CRK   C +   Q VCC
Sbjct: 530 RCGTSKGVIPCDEYLQIMKTTGEYLCTKRCRKKKSCGMHKCQEVCC 575


>Z83125-5|CAB05622.2|  362|Caenorhabditis elegans Hypothetical
           protein T15D6.6 protein.
          Length = 362

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 18/70 (25%), Positives = 34/70 (48%), Gaps = 7/70 (10%)
 Frame = +1

Query: 205 GTICGVPCSAYQQWMAGLFPLPCRKHSECRVMSKQ-HVCCNGFCTK--GIKATAPLQ--- 366
           G +CG   + +++ ++      C K+++C+ M K    C   +C K  G+K     Q   
Sbjct: 26  GLVCGACAAFFRRTVSLNIRYLCEKNNQCKGMRKNCRACRFDYCVKIAGMKRNLVKQRRN 85

Query: 367 -STTPVQILS 393
            + TP+ IL+
Sbjct: 86  STNTPMYILN 95


>AF040647-11|AAB94992.4|  270|Caenorhabditis elegans Hypothetical
           protein F54D12.1 protein.
          Length = 270

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +1

Query: 28  WPPHCHQRRSDLLIKFKVPFTSKSIFEY 111
           WP  C +R  D+L+    P+ +K+I  Y
Sbjct: 95  WPEQCTKRSVDMLLGIINPYNTKNIKTY 122


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,088,930
Number of Sequences: 27780
Number of extensions: 204891
Number of successful extensions: 529
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 524
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 529
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 818426686
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)