Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021334
         (463 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g13540.1 68414.m01587 expressed protein                             31   0.38 
At4g22214.1 68417.m03212 expressed protein                             28   3.5  
At3g55830.1 68416.m06203 glycosyltransferase family protein 47 s...    27   6.2  
At4g08450.1 68417.m01393 disease resistance protein (TIR-NBS-LRR...    27   8.2  

>At1g13540.1 68414.m01587 expressed protein 
          Length = 381

 Score = 31.1 bits (67), Expect = 0.38
 Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 3/53 (5%)
 Frame = -3

Query: 353 VAFIPLVQKPLQQTCCLLITRHSECFLQGSGNR---PAIHCWYALQGTPQIVP 204
           V FIP++ KPL   C   I RH +   + SG+      + C +     P+  P
Sbjct: 82  VVFIPVLDKPLSSNCYYAIKRHGKHSGEASGSAKEDDIVSCCFCSSFVPEAKP 134


>At4g22214.1 68417.m03212 expressed protein
          Length = 188

 Score = 27.9 bits (59), Expect = 3.5
 Identities = 17/58 (29%), Positives = 23/58 (39%), Gaps = 3/58 (5%)
 Frame = -1

Query: 361 MVPWLLYPWYKN--RCSKHVACSSRDILSAFYR-VAGIDQPSTAGTHCRAHHRLSLCV 197
           M  W L+PWY +  RC +     +     A YR   G   P   GT    H   + C+
Sbjct: 122 MCLWYLWPWYDSTKRCEETCQKQNNSPSGARYRYYGGFCTPIVRGTGFFIHGACNCCI 179


>At3g55830.1 68416.m06203 glycosyltransferase family protein 47
           similar to exostose-related protein 2, Homo sapiens,
           PIR:JC5935 [SP|Q93063], EXTL2, Mus musculus
           [GI:10443633]
          Length = 334

 Score = 27.1 bits (57), Expect = 6.2
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = -1

Query: 391 SGSERGLCFVMVPWLLYPWYKNRCSKHVACSSRD 290
           SGS +G   +M  W  Y   K   S + +CS  D
Sbjct: 68  SGSRKGYTLLMNTWKRYDLLKKSVSHYASCSRLD 101


>At4g08450.1 68417.m01393 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1234

 Score = 26.6 bits (56), Expect = 8.2
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = +2

Query: 17  ASISGHRTAISDAQTSSLNLKYHLLRKVFSNILD 118
           A IS      S A +   NLK HL  K+ S +LD
Sbjct: 239 AFISKSMAIYSRANSDDYNLKLHLQEKLLSKLLD 272


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,410,010
Number of Sequences: 28952
Number of extensions: 182095
Number of successful extensions: 502
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 484
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 502
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 772134480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)