Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021333
         (561 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2...    26   3.3  
SPBC1734.03 ||SPBC337.19|dihydropteroatesynthase/2-amino-4-hydro...    26   4.4  
SPAC607.04 |||inositol polyphosphate kinase |Schizosaccharomyces...    25   5.8  
SPBC1734.15 |rsc4|brd1|RSC complex subunit Rsc4|Schizosaccharomy...    25   7.6  
SPAC3G6.09c |tps2||trehalose-phosphate synthase Tps2 |Schizosacc...    25   7.6  
SPAC806.04c |||DUF89 family protein|Schizosaccharomyces pombe|ch...    25   7.6  
SPAC6F12.15c |cut9|dre1|anaphase-promoting complex subunit Cut9|...    25   7.6  

>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1217

 Score = 26.2 bits (55), Expect = 3.3
 Identities = 18/47 (38%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
 Frame = +1

Query: 289 TGNTDKEEHESSTNSTPQEHKSFAEFAKDKLDSAGR-ELRRRLPMAG 426
           TG TDK + + +T+     H S  EF K     A     RRR P AG
Sbjct: 540 TGMTDKNKDQLATDILNLIHSSNNEFMKSIFPVAEESNSRRRPPTAG 586


>SPBC1734.03 ||SPBC337.19|dihydropteroatesynthase/2-amino-4-hydroxy-
           6-
           hydroxymethyldihydropteridinediphosphokinase/dihydroneop
           terinaldolase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 686

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = +1

Query: 334 TPQEHKSFAEFAKDKLDSAGRELRRRLPMAGQLGAH 441
           TP+  K+ + + KD ++    EL  R+  A Q G H
Sbjct: 548 TPETMKALSIYEKDIVEEVAVELSSRVEAAVQSGVH 583


>SPAC607.04 |||inositol polyphosphate kinase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 268

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 13/49 (26%), Positives = 21/49 (42%)
 Frame = +3

Query: 390 WTRAPQTFTHGRSAWGSPDASAEITSTLNSYPANRCSADIPKGLPDSML 536
           W R   T+    +AWG     +++   LN +  + CS      L +S L
Sbjct: 141 WDRTNNTYIKRSTAWGKTLTDSDVVEGLNDFFVS-CSLSQKARLVESFL 188


>SPBC1734.15 |rsc4|brd1|RSC complex subunit Rsc4|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 542

 Score = 25.0 bits (52), Expect = 7.6
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = +1

Query: 232 CVIIARSVASFTMDGEDGGTGNTDKEEHESSTNSTPQEHK 351
           C ++  + A+ +++ +DG     + EE ESS N   +EHK
Sbjct: 101 CSVLIANTAN-SLESKDGTLNEEENEEMESSIN---EEHK 136


>SPAC3G6.09c |tps2||trehalose-phosphate synthase Tps2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 849

 Score = 25.0 bits (52), Expect = 7.6
 Identities = 11/40 (27%), Positives = 22/40 (55%)
 Frame = -2

Query: 560 PLSFCSTIKHTVW*TFGNISTTSVCWVGVECRSNLRGCIR 441
           P S+    KH++   + N +TT   +  +EC++NL   ++
Sbjct: 683 PGSYIEEKKHSISWCYQNANTTYSKFQSLECQTNLEDMLK 722


>SPAC806.04c |||DUF89 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 440

 Score = 25.0 bits (52), Expect = 7.6
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +3

Query: 459 ITSTLNSYPANRCSADIPKGLPDSM 533
           I + +N+     C AD+  GLPD +
Sbjct: 390 IANAINACALRTCKADVVVGLPDGL 414


>SPAC6F12.15c |cut9|dre1|anaphase-promoting complex subunit
           Cut9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 671

 Score = 25.0 bits (52), Expect = 7.6
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = -1

Query: 558 SELLQHHKAYCLVDLWEYQHYIGLLGRS 475
           S   ++  A+CLV L+++Q  + LLG +
Sbjct: 149 SSACRYLAAFCLVKLYDWQGALNLLGET 176


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,105,278
Number of Sequences: 5004
Number of extensions: 40260
Number of successful extensions: 120
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 236012634
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)