Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021333
(561 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0393 + 2831676-2831876,2831986-2832101,2832340-2832421,283... 29 2.5
06_01_0295 - 2154069-2155483,2155561-2155708 29 3.4
04_03_0751 + 19294393-19294488,19294582-19294653,19295093-192951... 29 3.4
01_07_0343 - 42866940-42867656 29 3.4
06_01_0219 + 1666921-1667120,1667418-1667466,1669432-1669626 28 4.4
11_01_0398 - 3008074-3008428,3009775-3009926,3010070-3011368 28 5.9
05_04_0022 - 17217626-17217643,17217740-17217856,17217987-172181... 28 5.9
01_06_0403 - 29060712-29060732,29061260-29061334,29061596-290617... 27 7.7
>06_01_0393 +
2831676-2831876,2831986-2832101,2832340-2832421,
2832515-2832671,2832755-2832848,2833942-2834008,
2834464-2835009
Length = 420
Score = 29.1 bits (62), Expect = 2.5
Identities = 15/49 (30%), Positives = 26/49 (53%)
Frame = +1
Query: 232 CVIIARSVASFTMDGEDGGTGNTDKEEHESSTNSTPQEHKSFAEFAKDK 378
C I++RS SFT D G+G++ E S+N Q + E++ ++
Sbjct: 307 CDILSRSDRSFTEDLSINGSGSSGARSEEPSSNKMHQTREGM-EYSNER 354
>06_01_0295 - 2154069-2155483,2155561-2155708
Length = 520
Score = 28.7 bits (61), Expect = 3.4
Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 4/53 (7%)
Frame = -1
Query: 378 FIFRKF-SKRFMFLRCRIRAALMFFF---IGVSGASVLPIHGETRDAPCDNDA 232
F+F F ++ F+ + CR+RA + FFF + A V + ET+ P + A
Sbjct: 440 FVFTVFVAQAFLAMLCRMRAGIFFFFAAWLAAMTAFVYLLLPETKGVPIEEVA 492
>04_03_0751 +
19294393-19294488,19294582-19294653,19295093-19295172,
19295323-19295422,19295504-19295557,19295667-19295744,
19295961-19296047,19296277-19296374,19296472-19296529,
19296956-19297077,19297344-19297500
Length = 333
Score = 28.7 bits (61), Expect = 3.4
Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
Frame = +3
Query: 384 QCWTRAPQTFTHGRSAWGSPDASAEITSTLNSYPANRC--SADIPKGLPDSMLYGAAEA 554
Q + + F R A+ D S ++ ++SY ANR +D P +P+ GA EA
Sbjct: 241 QIYVKYSALFRISREAYPYEDTSQLLSRVISSYGANRIMWGSDFPFVVPECGYKGAKEA 299
>01_07_0343 - 42866940-42867656
Length = 238
Score = 28.7 bits (61), Expect = 3.4
Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Frame = +1
Query: 274 GEDGGTGNTDKEEHESSTNS-TPQEHKSFAE 363
G DGG GNT+ + + TPQ HK F E
Sbjct: 103 GADGGNGNTNNSSSKRARLVWTPQLHKRFVE 133
>06_01_0219 + 1666921-1667120,1667418-1667466,1669432-1669626
Length = 147
Score = 28.3 bits (60), Expect = 4.4
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +3
Query: 444 DASAEITSTLNSYPANRCSADIPKGL 521
D S I+S N+YP N+ ++D+P L
Sbjct: 86 DYSDSISSAANAYPQNQSASDLPHNL 111
>11_01_0398 - 3008074-3008428,3009775-3009926,3010070-3011368
Length = 601
Score = 27.9 bits (59), Expect = 5.9
Identities = 13/40 (32%), Positives = 18/40 (45%)
Frame = +1
Query: 238 IIARSVASFTMDGEDGGTGNTDKEEHESSTNSTPQEHKSF 357
II R V + GG GN K S NS+ ++H +
Sbjct: 105 IIERWVIQYEARKSGGGNGNGSKNNGRKSRNSSAEDHSLY 144
>05_04_0022 -
17217626-17217643,17217740-17217856,17217987-17218112,
17218194-17218340,17218423-17218533,17218625-17218747,
17218827-17218958,17219157-17219252,17219532-17219653,
17219833-17220130,17220213-17220458,17220711-17220852,
17221068-17222105,17222183-17222262,17222558-17222800,
17222907-17222967,17224059-17224675
Length = 1238
Score = 27.9 bits (59), Expect = 5.9
Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
Frame = +1
Query: 232 CVIIARSVASFTMD----GEDGGTGNTDKEEHESSTNSTPQEHKSFAEFAKDKLDSAGRE 399
C+ RSV+S EDG + D+EE + +S +H SFAE KD L+ +
Sbjct: 207 CIQFGRSVSSVIPKWPEFSEDGTIHSIDQEEKCRAFDSNCGDHDSFAEL-KDFLNCEDPD 265
Query: 400 LR 405
L+
Sbjct: 266 LQ 267
>01_06_0403 -
29060712-29060732,29061260-29061334,29061596-29061762,
29061841-29061996,29062412-29062535,29062949-29063047,
29063155-29063254,29063331-29063380,29063461-29063562,
29063709-29063786,29063865-29064131,29064225-29064321,
29064446-29064746,29066714-29066805,29066890-29067005,
29067445-29067519,29067846-29067911,29068206-29068262,
29068381-29068430,29068518-29068688,29068969-29069060,
29069124-29069281
Length = 837
Score = 27.5 bits (58), Expect = 7.7
Identities = 15/47 (31%), Positives = 27/47 (57%)
Frame = +1
Query: 274 GEDGGTGNTDKEEHESSTNSTPQEHKSFAEFAKDKLDSAGRELRRRL 414
G +G + DK+E +S +++ + K+ A K++ SAG + RR L
Sbjct: 295 GFEGIVHDDDKKEWKSDEDNSEGDKKAKAVSFKNRAISAGNKFRRSL 341
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,329,703
Number of Sequences: 37544
Number of extensions: 255773
Number of successful extensions: 885
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 870
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 885
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1281410928
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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