Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021333
         (561 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_11691| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.28 
SB_38061| Best HMM Match : DUF995 (HMM E-Value=4)                      32   0.37 
SB_41991| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.5  
SB_18600| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.4  
SB_9925| Best HMM Match : Kinesin (HMM E-Value=0.00094)                29   3.4  
SB_6589| Best HMM Match : zf-C2H2 (HMM E-Value=1.2e-36)                28   6.0  
SB_1031| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   7.9  

>SB_11691| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1448

 Score = 32.3 bits (70), Expect = 0.28
 Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
 Frame = +1

Query: 319 SSTNSTPQEHKSFAEFAKDKLDSAGRELRRRLPMAGQLGAHLMHPRRLLLHSTPT-QQTD 495
           SSTN T +  +  A   K  +DS+  + R +       G H+ HP + L+ S+PT  +T 
Sbjct: 337 SSTNQTERVEEKGALIKKAMIDSSREDFRDQAH-----GEHVTHPIKWLVPSSPTVSRTT 391

Query: 496 VVLIFPKVY 522
            + + P+ Y
Sbjct: 392 ALSMVPRFY 400


>SB_38061| Best HMM Match : DUF995 (HMM E-Value=4)
          Length = 220

 Score = 31.9 bits (69), Expect = 0.37
 Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
 Frame = +1

Query: 271 DGEDGGTGNTD--KEEHESSTNSTPQEHKSFAEFAKDKLDSAGRELRRRL 414
           DG    +GN++  ++EH+   NS   + K      K KLD A R+L +RL
Sbjct: 112 DGNSSDSGNSEVTEQEHDEDANSEENDDK---PTRKTKLDKAQRKLNKRL 158


>SB_41991| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 779

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 13/19 (68%), Positives = 16/19 (84%)
 Frame = +1

Query: 271 DGEDGGTGNTDKEEHESST 327
           DG+ G TGNTDKE+ ES+T
Sbjct: 518 DGQQG-TGNTDKEDQESTT 535


>SB_18600| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2388

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = +1

Query: 271 DGEDGGTGNTDKEEHESSTNSTPQEHKSFAEFAKDKLDSAGRE 399
           +GE+    + DKEE ES + S   E +S  E   ++ DS   E
Sbjct: 684 EGEESEQEDDDKEESESESESEESEEESEEEEESEESDSEESE 726


>SB_9925| Best HMM Match : Kinesin (HMM E-Value=0.00094)
          Length = 1671

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 4/52 (7%)
 Frame = +1

Query: 184 CDDVRIRRPKGF*ARVCVIIARSVASFTMDGEDGGTG----NTDKEEHESST 327
           CD+ RIR+P+   A   V      A    DG   G G    N+++EE+ SST
Sbjct: 320 CDESRIRKPRLRTAEPRVRTTAIPARLREDGPASGEGEDQSNSEQEEYNSST 371


>SB_6589| Best HMM Match : zf-C2H2 (HMM E-Value=1.2e-36)
          Length = 651

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 19/54 (35%), Positives = 25/54 (46%)
 Frame = -1

Query: 273 IHGETRDAPCDNDANPCSKAFRPSNSYIIAKNKTFEFNLVTALNYTRNSYLKTR 112
           I G T   P   D   C K F  +++    K +TF  N  +AL  TR S  +TR
Sbjct: 600 IFGHTGQRPHKCDV--CGKGFTLASTLNTHKERTFLANHSSALTVTRPSIRRTR 651


>SB_1031| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1933

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 21/79 (26%), Positives = 34/79 (43%)
 Frame = +1

Query: 325  TNSTPQEHKSFAEFAKDKLDSAGRELRRRLPMAGQLGAHLMHPRRLLLHSTPTQQTDVVL 504
            TN TP E  S A+ A    D+A  +    L ++    AH+++P  +    T  ++ D   
Sbjct: 1422 TNLTPSEVASIADRASRSNDTAMVKAAAELALSCLPMAHMLNPGEIQRALTQCREQD--- 1478

Query: 505  IFPKVYQTVCFMVLQKLRG 561
              P++    C  V    RG
Sbjct: 1479 --PQLLDRACHAVENAARG 1495


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,718,880
Number of Sequences: 59808
Number of extensions: 302859
Number of successful extensions: 965
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 844
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 957
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1312894764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)