Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021333
         (561 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82284-5|CAB05291.1|  418|Caenorhabditis elegans Hypothetical pr...    30   0.99 
U39666-2|AAA80411.2|  835|Caenorhabditis elegans Oligopeptide tr...    28   5.3  
AF000418-1|AAC39119.1|  796|Caenorhabditis elegans low-affinity ...    28   5.3  
AL021481-3|CAD90182.1|  459|Caenorhabditis elegans Hypothetical ...    27   9.2  
AC025716-20|AAT39977.2|  946|Caenorhabditis elegans Hypothetical...    27   9.2  
AC006780-5|AAF60646.1|  287|Caenorhabditis elegans Hypothetical ...    27   9.2  
AC006780-4|AAO21411.1|  312|Caenorhabditis elegans Hypothetical ...    27   9.2  

>Z82284-5|CAB05291.1|  418|Caenorhabditis elegans Hypothetical
           protein T27E7.6 protein.
          Length = 418

 Score = 30.3 bits (65), Expect = 0.99
 Identities = 13/51 (25%), Positives = 26/51 (50%)
 Frame = +1

Query: 304 KEEHESSTNSTPQEHKSFAEFAKDKLDSAGRELRRRLPMAGQLGAHLMHPR 456
           + EH    +   +EH+   E A++K+D+A RE   ++ +  +    +M  R
Sbjct: 137 EREHRMKMSEAEEEHRKEKEIAQEKMDAAKREGSMKIALVEEEKQKIMKER 187


>U39666-2|AAA80411.2|  835|Caenorhabditis elegans Oligopeptide
           transporter protein 2 protein.
          Length = 835

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 15/41 (36%), Positives = 19/41 (46%)
 Frame = +1

Query: 262 FTMDGEDGGTGNTDKEEHESSTNSTPQEHKSFAEFAKDKLD 384
           +T D EDG  G  D+EE E        ++K F    KD  D
Sbjct: 792 YTTDEEDGEIGVDDEEEIEDHNPRYSIDNKGFHPDEKDTFD 832


>AF000418-1|AAC39119.1|  796|Caenorhabditis elegans low-affinity
           peptide transporter protein.
          Length = 796

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 15/41 (36%), Positives = 19/41 (46%)
 Frame = +1

Query: 262 FTMDGEDGGTGNTDKEEHESSTNSTPQEHKSFAEFAKDKLD 384
           +T D EDG  G  D+EE E        ++K F    KD  D
Sbjct: 753 YTTDEEDGEIGVDDEEEIEDHNPRYSIDNKGFHPDEKDTFD 793


>AL021481-3|CAD90182.1|  459|Caenorhabditis elegans Hypothetical
           protein Y43F4B.5b protein.
          Length = 459

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 13/48 (27%), Positives = 25/48 (52%)
 Frame = +1

Query: 268 MDGEDGGTGNTDKEEHESSTNSTPQEHKSFAEFAKDKLDSAGRELRRR 411
           +DG   G G+ +  +H  S +  P E++      +++LD   R+L+ R
Sbjct: 412 LDGTGSG-GHQEALQHIESRSEVPDENRRSRSGIRERLDDRIRQLKAR 458


>AC025716-20|AAT39977.2|  946|Caenorhabditis elegans Hypothetical
           protein Y39G10AR.18a protein.
          Length = 946

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +3

Query: 432 WGSPDASAEITSTLNSYPANRCSADIPKGL 521
           WG P+ SAE+   + +Y A  C+   P  L
Sbjct: 133 WGEPNCSAEVAKAITTY-AYECAVPRPADL 161


>AC006780-5|AAF60646.1|  287|Caenorhabditis elegans Hypothetical
           protein Y47D9A.2a protein.
          Length = 287

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = +1

Query: 463 LLHSTPTQQTDVVLIFPKVYQTVCFMVLQKLR 558
           L+H + T   +  ++FP V+Q + + V  +LR
Sbjct: 75  LVHCSLTPLDNATMVFPVVFQNITYQVYVRLR 106


>AC006780-4|AAO21411.1|  312|Caenorhabditis elegans Hypothetical
           protein Y47D9A.2b protein.
          Length = 312

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = +1

Query: 463 LLHSTPTQQTDVVLIFPKVYQTVCFMVLQKLR 558
           L+H + T   +  ++FP V+Q + + V  +LR
Sbjct: 75  LVHCSLTPLDNATMVFPVVFQNITYQVYVRLR 106


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,657,336
Number of Sequences: 27780
Number of extensions: 230932
Number of successful extensions: 693
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 675
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 693
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1155524042
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)