Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021333
(561 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g35830.1 68414.m04452 VQ motif-containing protein contains PF... 32 0.23
At3g60880.2 68416.m06811 dihydrodipicolinate synthase 1 (DHDPS1)... 30 1.2
At3g60880.1 68416.m06810 dihydrodipicolinate synthase 1 (DHDPS1)... 30 1.2
At3g19510.1 68416.m02472 homeobox protein (HAT 3.1) identical to... 29 1.6
At4g32820.1 68417.m04668 expressed protein ; expression supporte... 29 2.8
At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing ... 28 3.7
At3g53040.1 68416.m05846 late embryogenesis abundant protein, pu... 28 3.7
At3g56570.1 68416.m06290 SET domain-containing protein low simil... 28 4.9
At3g51060.1 68416.m05591 zinc finger protein, putative / lateral... 28 4.9
At5g16880.3 68418.m01977 VHS domain-containing protein / GAT dom... 27 6.5
At3g28770.1 68416.m03591 expressed protein 27 6.5
At2g19910.1 68415.m02327 RNA-dependent RNA polymerase family pro... 27 6.5
At2g15580.1 68415.m01784 zinc finger (C3HC4-type RING finger) fa... 27 6.5
At3g07610.1 68416.m00911 transcription factor jumonji (jmjC) dom... 27 8.6
At2g45440.1 68415.m05652 dihydrodipicolinate synthase 2 (DHDPS2)... 27 8.6
>At1g35830.1 68414.m04452 VQ motif-containing protein contains
PF05678: VQ motif
Length = 302
Score = 32.3 bits (70), Expect = 0.23
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = +1
Query: 268 MDGEDGGTGNTDKEEHESSTNSTPQEHKSF 357
MD + G+ + ++HESS+ PQ+H SF
Sbjct: 1 MDSCNSGSLQSSSDDHESSSTGAPQDHSSF 30
>At3g60880.2 68416.m06811 dihydrodipicolinate synthase 1 (DHDPS1)
(DHDPS) (DHPS1) identical to SP|Q9LZX6
Dihydrodipicolinate synthase 1, chloroplast precursor
(EC 4.2.1.52) (DHDPS 1) {Arabidopsis thaliana}
Length = 365
Score = 29.9 bits (64), Expect = 1.2
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +2
Query: 203 EGLKAFEHGFASLSHGASRVSPWMGRT 283
E + A E GFA HGA ++P+ G+T
Sbjct: 147 EAIHATEQGFAMGMHGALHINPYYGKT 173
>At3g60880.1 68416.m06810 dihydrodipicolinate synthase 1 (DHDPS1)
(DHDPS) (DHPS1) identical to SP|Q9LZX6
Dihydrodipicolinate synthase 1, chloroplast precursor
(EC 4.2.1.52) (DHDPS 1) {Arabidopsis thaliana}
Length = 364
Score = 29.9 bits (64), Expect = 1.2
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +2
Query: 203 EGLKAFEHGFASLSHGASRVSPWMGRT 283
E + A E GFA HGA ++P+ G+T
Sbjct: 146 EAIHATEQGFAMGMHGALHINPYYGKT 172
>At3g19510.1 68416.m02472 homeobox protein (HAT 3.1) identical to
homeotic protein HAT 3.1 (GI:11994474) [Arabidopsis
thaliana]
Length = 723
Score = 29.5 bits (63), Expect = 1.6
Identities = 18/71 (25%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
Frame = +1
Query: 274 GEDGGTGNTDKEEHESSTNSTPQEHKSFAEFAKDKL-DSAGRE-LRRRLPMAGQLGAHLM 447
GE+GG+G +K + + P+ + + F +++ D A +E L + L M + +
Sbjct: 603 GENGGSGEIEKSSSSACKQTDPKTQRLYISFQENQYPDKATKESLAKELQMTVKQVNNWF 662
Query: 448 HPRRLLLHSTP 480
RR ++S P
Sbjct: 663 KHRRWSINSKP 673
>At4g32820.1 68417.m04668 expressed protein ; expression supported
by MPSS
Length = 1817
Score = 28.7 bits (61), Expect = 2.8
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = +1
Query: 271 DGEDGGTGNTDKEEHESSTNSTPQEHKSFAEFAKDKLD 384
DG + G +KE+ E + P+ + AE KD+L+
Sbjct: 878 DGSEEQVGYREKEQSEQQSKQIPEHTEEVAEEEKDELE 915
>At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing
protein
Length = 527
Score = 28.3 bits (60), Expect = 3.7
Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
Frame = +1
Query: 271 DGEDGGTGNTDKE-EHESSTNSTPQEHKSFAEFAKDKLDSAGRELRRR 411
DGE+ G G D+E E S+ +E E ++DK R + R
Sbjct: 64 DGEENGGGKRDRERERHRSSRDKDRERDKVREGSRDKESDRERSSKER 111
>At3g53040.1 68416.m05846 late embryogenesis abundant protein,
putative / LEA protein, putative similar to LEA protein
in group 3 [Arabidopsis thaliana] GI:1526424; contains
Pfam profile PF02987: Late embryogenesis abundant
protein
Length = 479
Score = 28.3 bits (60), Expect = 3.7
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +1
Query: 325 TNSTPQEHKSFAEFAKDKLDSAGRELRRRL 414
T T Q+ + AK+K+D AG E RR++
Sbjct: 314 TEETKQKAVETKDTAKEKMDEAGEEARRKM 343
>At3g56570.1 68416.m06290 SET domain-containing protein low
similarity to SP|Q43088 Ribulose-1,5 bisphosphate
carboxylase/oxygenase large subunit N-
methyltransferase, chloroplast precursor (EC 2.1.1.127)
{Pisum sativum}; contains Pfam profile PF00856: SET
domain
Length = 531
Score = 27.9 bits (59), Expect = 4.9
Identities = 13/43 (30%), Positives = 22/43 (51%)
Frame = +1
Query: 271 DGEDGGTGNTDKEEHESSTNSTPQEHKSFAEFAKDKLDSAGRE 399
D +D TD++E S +S+P++ SF E + D +E
Sbjct: 218 DNDDAANETTDEDEPSSKISSSPEQ--SFEEVPGENTDDEAKE 258
>At3g51060.1 68416.m05591 zinc finger protein, putative / lateral
root primordium (LRP) protein-related similar to lateral
root primordium 1 (LRP1) [Arabidopsis thaliana]
GI:882341; contains Pfam profile PF05142: Domain of
unknown function (DUF702)
Length = 252
Score = 27.9 bits (59), Expect = 4.9
Identities = 12/28 (42%), Positives = 18/28 (64%), Gaps = 2/28 (7%)
Frame = +1
Query: 262 FTMDGEDGGTGN--TDKEEHESSTNSTP 339
F++DG GG G ++E+H S+TN P
Sbjct: 5 FSLDGGGGGGGGGGNNQEDHRSNTNPPP 32
>At5g16880.3 68418.m01977 VHS domain-containing protein / GAT
domain-containing protein weak similarity to hepatocyte
growth factor-regulated tyrosine kinase substrate [Homo
sapiens] GI:2731383; contains Pfam profiles PF00790: VHS
domain, PF03127: GAT domain
Length = 297
Score = 27.5 bits (58), Expect = 6.5
Identities = 15/54 (27%), Positives = 27/54 (50%)
Frame = -3
Query: 472 SVEVISADASGEPQADRPWVNVCGALVQHCRVYLSQIQQKIYVLEV*NSCCSHV 311
S+E++S S PQ D ++ LVQ CR + +Q+ I + C +++
Sbjct: 243 SIELLSTVLSSSPQHDALQDDLTTTLVQQCRQSQTTVQRIIETADEQTLCTANL 296
>At3g28770.1 68416.m03591 expressed protein
Length = 2081
Score = 27.5 bits (58), Expect = 6.5
Identities = 11/36 (30%), Positives = 21/36 (58%)
Frame = +1
Query: 271 DGEDGGTGNTDKEEHESSTNSTPQEHKSFAEFAKDK 378
+ ED + N +K+E+E + T +E K + ++DK
Sbjct: 1001 ESEDSASKNREKKEYEEKKSKTKEEAKKEKKKSQDK 1036
>At2g19910.1 68415.m02327 RNA-dependent RNA polymerase family
protein contains Pfam domain, PF05183: RNA dependent RNA
polymerase
Length = 992
Score = 27.5 bits (58), Expect = 6.5
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +2
Query: 248 GASRVSPWMGRTEAPETPIKKNMRAA 325
G+ R+SP ++P TP KK+ RA+
Sbjct: 86 GSPRLSPGESPVQSPRTPAKKSCRAS 111
>At2g15580.1 68415.m01784 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 196
Score = 27.5 bits (58), Expect = 6.5
Identities = 13/41 (31%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
Frame = +1
Query: 298 TDKEEHESSTNSTPQE--HKSFAEFAKDKLDSAGRELRRRL 414
T+ E H++ + + + +KS+ E +KLD A +E ++RL
Sbjct: 50 TNHESHQAHVSFSERSVRNKSYGEDNDEKLDGAAKEAKQRL 90
>At3g07610.1 68416.m00911 transcription factor jumonji (jmjC)
domain-containing protein contains Pfam domain, PF02373:
jmjC domain
Length = 1027
Score = 27.1 bits (57), Expect = 8.6
Identities = 18/57 (31%), Positives = 26/57 (45%)
Frame = +1
Query: 226 RVCVIIARSVASFTMDGEDGGTGNTDKEEHESSTNSTPQEHKSFAEFAKDKLDSAGR 396
RV +A V T D EDGG K + TP++ + E K+++D A R
Sbjct: 26 RVSTKLANYVDPPTDDEEDGGPKRKGKRGGNRAPKKTPKKDE---EMQKNEIDEANR 79
>At2g45440.1 68415.m05652 dihydrodipicolinate synthase 2 (DHDPS2)
identical to dihydrodipicolinate synthase 2 (DHDPS2)
[Arabidopsis thaliana] GI:11066382
Length = 365
Score = 27.1 bits (57), Expect = 8.6
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +2
Query: 203 EGLKAFEHGFASLSHGASRVSPWMGRT 283
E + A E GFA H A ++P+ G+T
Sbjct: 147 EAIHATEQGFAVGMHAALHINPYYGKT 173
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,865,497
Number of Sequences: 28952
Number of extensions: 208333
Number of successful extensions: 713
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 688
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 712
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1072696904
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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