Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021331
         (490 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomy...    29   0.50 
SPBC1706.01 |tea4|wsh3|tip elongation aberrant protein Tea4|Schi...    25   6.1  
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    25   8.1  
SPBC1734.04 ||SPBC337.20|mannosyltransferase complex subunit, An...    25   8.1  
SPBC337.03 |||conserved eukaryotic protein|Schizosaccharomyces p...    25   8.1  

>SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 603

 Score = 28.7 bits (61), Expect = 0.50
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = +2

Query: 347 HRNEPARTTHGRILDEPLLSLENPGNSHASPLPAPVSEN 463
           H+NE    THG  +  P  +L   G SH+S +P+ +S N
Sbjct: 294 HQNE----THGSTISVPNPNLSQMGPSHSSSVPSNLSPN 328


>SPBC1706.01 |tea4|wsh3|tip elongation aberrant protein
           Tea4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 809

 Score = 25.0 bits (52), Expect = 6.1
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +2

Query: 428 HASPLPAPVSENLIAPKPEPD 490
           H SP P   +E ++ P PE D
Sbjct: 632 HESPAPLECNEEMVIPTPELD 652


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 24.6 bits (51), Expect = 8.1
 Identities = 24/111 (21%), Positives = 40/111 (36%)
 Frame = +2

Query: 113 PPTLRPLRTGIAPAEMLNELLGRTTKQDDNGDEANGGVIAHRVLRDIHRAAIKSYCSPRX 292
           PP +   R+ +  +    + L + T  D +     GGV+  R          KS+ +P  
Sbjct: 21  PPLMTGDRSALLNSIQKGKKLKKATTNDRSAPVVGGGVVGER-----KSNTPKSFAAPPV 75

Query: 293 XXXXXXXXXXXNRKQRNDHRNEPARTTHGRILDEPLLSLENPGNSHASPLP 445
                      N  Q+ + R  P+    G +    +  L + G S AS  P
Sbjct: 76  PTGAPSLPTSSNNTQQAEER--PSMPALGGLFAGGMPKLRHIGKSSASAAP 124


>SPBC1734.04 ||SPBC337.20|mannosyltransferase complex subunit, Anp
           family |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 430

 Score = 24.6 bits (51), Expect = 8.1
 Identities = 9/31 (29%), Positives = 14/31 (45%)
 Frame = -2

Query: 480 GLGAIKFSETGAGSGDACEFPGFSSERRGSS 388
           G+G +          + CEFP FS E+   +
Sbjct: 317 GIGGVSIMSKAKVHLEGCEFPAFSFEKHAET 347


>SPBC337.03 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 387

 Score = 24.6 bits (51), Expect = 8.1
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +2

Query: 407 LENPGNSHASPLPAPVS 457
           +ENP   + SPLP P S
Sbjct: 316 VENPSEDNLSPLPPPAS 332


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,521,612
Number of Sequences: 5004
Number of extensions: 25163
Number of successful extensions: 75
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 75
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 190087364
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)