Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021331
(490 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0584 - 4762476-4762613,4763986-4764075,4765048-4765146,476... 29 2.6
12_02_0337 + 17709451-17710077,17710167-17710985 28 3.5
01_01_0889 + 7008077-7009261 28 3.5
12_02_0360 - 17966857-17966865,17966866-17966954,17967276-179673... 28 4.6
07_03_0562 + 19535801-19535865,19535972-19536017,19536125-195362... 28 4.6
04_04_1374 - 33028790-33028951,33029033-33029087,33029402-330294... 28 4.6
02_01_0656 - 4870315-4870975,4872018-4872245,4872874-4872987,487... 28 4.6
10_08_0158 - 15298902-15299111,15300557-15300655,15301375-153014... 27 6.1
04_04_0347 + 24564589-24565296 27 6.1
12_01_0399 + 3152219-3152721,3152995-3153127,3155013-3155097,315... 27 8.1
09_04_0182 + 15376025-15376498 27 8.1
04_04_1081 - 30700791-30700904,30701011-30703053,30703126-30704376 27 8.1
04_04_0630 - 26719136-26719150,26720065-26720134,26720438-26721912 27 8.1
>12_01_0584 -
4762476-4762613,4763986-4764075,4765048-4765146,
4766032-4766154,4766243-4766405,4767307-4767356,
4767826-4767942,4769477-4769683,4769763-4769900,
4771212-4771274,4771358-4771441,4771933-4772084,
4772219-4772357,4772814-4772924
Length = 557
Score = 28.7 bits (61), Expect = 2.6
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = +2
Query: 338 RNDHRNEPARTTHGRILDEPLLSLENPGN 424
RNDH N+ HGRI + P L+ PG+
Sbjct: 63 RNDHMNQNKIIRHGRIKEPPQGWLDCPGS 91
>12_02_0337 + 17709451-17710077,17710167-17710985
Length = 481
Score = 28.3 bits (60), Expect = 3.5
Identities = 14/37 (37%), Positives = 23/37 (62%)
Frame = +2
Query: 176 GRTTKQDDNGDEANGGVIAHRVLRDIHRAAIKSYCSP 286
GR ++ D+ +EANGG+I R +++ A I+ SP
Sbjct: 267 GRDDRRRDDDEEANGGII--RSAAELYEAGIRFRRSP 301
>01_01_0889 + 7008077-7009261
Length = 394
Score = 28.3 bits (60), Expect = 3.5
Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Frame = +1
Query: 331 KTEKRSPERTCSHDSRPDPGRAPPLAR-KSRELTRVSASSSC 453
K +K+SP S + P P PP R + R R + +SSC
Sbjct: 263 KPKKKSPSTASSKAAPPPPPPPPPTTRHQIRRKRRAARASSC 304
>12_02_0360 -
17966857-17966865,17966866-17966954,17967276-17967399,
17967639-17967717,17968267-17968352,17968471-17968661,
17970496-17970560,17971192-17971282,17971705-17971801,
17971883-17972128,17972248-17972505
Length = 444
Score = 27.9 bits (59), Expect = 4.6
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = +2
Query: 434 SPLPAPVSENLIAPKPEP 487
SPLPAP+ L+AP P P
Sbjct: 30 SPLPAPLLRLLLAPAPSP 47
>07_03_0562 +
19535801-19535865,19535972-19536017,19536125-19536223,
19536588-19536674,19537545-19537613,19537702-19538710,
19539217-19539365,19539453-19540487,19540488-19541003
Length = 1024
Score = 27.9 bits (59), Expect = 4.6
Identities = 15/45 (33%), Positives = 21/45 (46%)
Frame = +1
Query: 337 EKRSPERTCSHDSRPDPGRAPPLARKSRELTRVSASSSCFRELNR 471
++RS E H++ PG R E TR +SSS R L +
Sbjct: 644 QQRSTEAPSLHENHRAPGSVAKTKRAPSEQTRKGSSSSSSRPLQK 688
>04_04_1374 -
33028790-33028951,33029033-33029087,33029402-33029466,
33029558-33029701,33029825-33029878,33029971-33030220,
33030340-33030446,33031206-33031216,33032682-33032796,
33032897-33033005,33033088-33033203,33033288-33033647
Length = 515
Score = 27.9 bits (59), Expect = 4.6
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = -2
Query: 273 LFIAALWMSLRTRCAITPPFASSPLSSC 190
LFI A+ + T+ A+TPP S+ L +C
Sbjct: 202 LFIVAVQYTPSTKPAVTPPVGSTELPTC 229
>02_01_0656 -
4870315-4870975,4872018-4872245,4872874-4872987,
4873813-4873901
Length = 363
Score = 27.9 bits (59), Expect = 4.6
Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Frame = +3
Query: 51 GIAPARAA-LMSGGLYSAIFEGRQHFGLFGPG*R 149
G+AP +AA L+ GL ++ +HFGL PG R
Sbjct: 152 GLAPEQAAPLLCAGL--TVYSPLKHFGLMSPGLR 183
>10_08_0158 -
15298902-15299111,15300557-15300655,15301375-15301443,
15301535-15301681,15301762-15301839,15302221-15302264,
15302521-15302603,15303394-15303620
Length = 318
Score = 27.5 bits (58), Expect = 6.1
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +2
Query: 365 RTTHGRILDEPLLSLENPGNSHASPLP 445
RTT+ + DE + +P N+ ASP P
Sbjct: 113 RTTYNEVADELVAEFADPNNNFASPDP 139
>04_04_0347 + 24564589-24565296
Length = 235
Score = 27.5 bits (58), Expect = 6.1
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = +2
Query: 422 NSHASPLPAPVSENLIAPKPEP 487
NSH +P PAP S +P P P
Sbjct: 150 NSHLAPAPAPSSHVQYSPAPTP 171
>12_01_0399 +
3152219-3152721,3152995-3153127,3155013-3155097,
3155321-3155586
Length = 328
Score = 27.1 bits (57), Expect = 8.1
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = +2
Query: 386 LDEPLLSLENPGNSHASPLPAPVSENLIAPKPEP 487
LD P LS ++P S +P P P AP P P
Sbjct: 47 LDFPSLSDDSPAISDPTPPPPPPMAATPAPAPRP 80
>09_04_0182 + 15376025-15376498
Length = 157
Score = 27.1 bits (57), Expect = 8.1
Identities = 16/44 (36%), Positives = 20/44 (45%)
Frame = -2
Query: 486 GSGLGAIKFSETGAGSGDACEFPGFSSERRGSSRIRP*VVRAGS 355
G G G + S +G+GSG A S R GS + AGS
Sbjct: 67 GLGPGGVSVSGSGSGSGSAAGVGSTSGSRSGSVSVGGASSSAGS 110
>04_04_1081 - 30700791-30700904,30701011-30703053,30703126-30704376
Length = 1135
Score = 27.1 bits (57), Expect = 8.1
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = +2
Query: 122 LRPLRTGIAPAEMLNELLGRTTKQDDNGDEANGGV 226
LRPL TG+ P +LG Q+ G EA G+
Sbjct: 807 LRPLTTGVGPLPACQTVLGAPDPQE--GPEATAGM 839
>04_04_0630 - 26719136-26719150,26720065-26720134,26720438-26721912
Length = 519
Score = 27.1 bits (57), Expect = 8.1
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = +2
Query: 416 PGNSHASPLPAPVSENLIA 472
PG +H+SPLP P+ I+
Sbjct: 132 PGGNHSSPLPPPIDSRRIS 150
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,509,324
Number of Sequences: 37544
Number of extensions: 233969
Number of successful extensions: 1256
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1232
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1011709100
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -