Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021331
         (490 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_35034| Best HMM Match : ENTH (HMM E-Value=0)                        30   1.2  
SB_36353| Best HMM Match : Glycogen_syn (HMM E-Value=1.1)              29   2.1  
SB_49163| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.7  
SB_11872| Best HMM Match : C1_2 (HMM E-Value=5.5)                      27   6.3  

>SB_35034| Best HMM Match : ENTH (HMM E-Value=0)
          Length = 455

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 13/45 (28%), Positives = 23/45 (51%)
 Frame = +2

Query: 353 NEPARTTHGRILDEPLLSLENPGNSHASPLPAPVSENLIAPKPEP 487
           + P  +T+G+ +  P +S+ +P +    P PAP S   +   P P
Sbjct: 284 SNPWSSTNGQSIIAPAVSISDPFDPFGQPAPAPSSSGDLFMTPSP 328


>SB_36353| Best HMM Match : Glycogen_syn (HMM E-Value=1.1)
          Length = 118

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 14/35 (40%), Positives = 17/35 (48%)
 Frame = +2

Query: 347 HRNEPARTTHGRILDEPLLSLENPGNSHASPLPAP 451
           HR EPA+  H  + DE   +   P    A P PAP
Sbjct: 66  HRLEPAKYEHPNLTDEIRSAFNYPRPPSAPPSPAP 100


>SB_49163| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 207

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 16/44 (36%), Positives = 21/44 (47%)
 Frame = +2

Query: 359 PARTTHGRILDEPLLSLENPGNSHASPLPAPVSENLIAPKPEPD 490
           PA TT G I +    +LE P N +    P   +EN +    EPD
Sbjct: 55  PANTTTGAINEPVYNTLEEPDNPNQYYAPKGSTENHVYKSLEPD 98


>SB_11872| Best HMM Match : C1_2 (HMM E-Value=5.5)
          Length = 425

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = -2

Query: 237 RCAITPPFASSPLSSCFVVRPRSS 166
           RC +TPP +   LS+  V R RSS
Sbjct: 216 RCILTPPGSPKRLSAVLVARKRSS 239


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,342,355
Number of Sequences: 59808
Number of extensions: 227991
Number of successful extensions: 836
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 785
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 832
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1038380485
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)