Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021331
(490 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF201422-1|AAF21439.1| 2296|Homo sapiens splicing coactivator su... 31 2.1
AC004493-2|AAC08453.1| 1791|Homo sapiens KIAA0324 protein. 31 2.1
AB016092-1|BAA83718.1| 2752|Homo sapiens RNA binding protein pro... 31 2.1
AB016091-1|BAA83717.1| 1275|Homo sapiens RNA binding protein pro... 31 2.1
AB002322-1|BAA20782.3| 2800|Homo sapiens KIAA0324 protein protein. 31 2.1
BC103827-1|AAI03828.1| 440|Homo sapiens golgi reassembly stacki... 30 4.9
BC103826-1|AAI03827.1| 440|Homo sapiens golgi reassembly stacki... 30 4.9
BC075854-1|AAH75854.1| 440|Homo sapiens golgi reassembly stacki... 30 4.9
AJ409349-1|CAC35160.1| 440|Homo sapiens golgi perepheral membra... 30 4.9
AK091168-1|BAC03598.1| 246|Homo sapiens protein ( Homo sapiens ... 29 6.5
X63692-1|CAA45219.1| 1616|Homo sapiens DNA (cytosine-5-)-methylt... 29 8.6
AC010077-1|AAD54507.1| 966|Homo sapiens MTDM_HUMAN [AA 1- 966] ... 29 8.6
AB209413-1|BAD92650.1| 1606|Homo sapiens DNA (cytosine-5-)-methy... 29 8.6
>AF201422-1|AAF21439.1| 2296|Homo sapiens splicing coactivator subunit
SRm300 protein.
Length = 2296
Score = 31.1 bits (67), Expect = 2.1
Identities = 20/42 (47%), Positives = 25/42 (59%)
Frame = +1
Query: 325 EPKTEKRSPERTCSHDSRPDPGRAPPLARKSRELTRVSASSS 450
EPKT+ R+P R S S P+ R L+R+SR SASSS
Sbjct: 1677 EPKTKSRTPPRRRSSRSSPELTRKARLSRRSR-----SASSS 1713
>AC004493-2|AAC08453.1| 1791|Homo sapiens KIAA0324 protein.
Length = 1791
Score = 31.1 bits (67), Expect = 2.1
Identities = 20/42 (47%), Positives = 25/42 (59%)
Frame = +1
Query: 325 EPKTEKRSPERTCSHDSRPDPGRAPPLARKSRELTRVSASSS 450
EPKT+ R+P R S S P+ R L+R+SR SASSS
Sbjct: 709 EPKTKSRTPPRRRSSRSSPELTRKARLSRRSR-----SASSS 745
>AB016092-1|BAA83718.1| 2752|Homo sapiens RNA binding protein protein.
Length = 2752
Score = 31.1 bits (67), Expect = 2.1
Identities = 20/42 (47%), Positives = 25/42 (59%)
Frame = +1
Query: 325 EPKTEKRSPERTCSHDSRPDPGRAPPLARKSRELTRVSASSS 450
EPKT+ R+P R S S P+ R L+R+SR SASSS
Sbjct: 1677 EPKTKSRTPPRRRSSRSSPELTRKARLSRRSR-----SASSS 1713
>AB016091-1|BAA83717.1| 1275|Homo sapiens RNA binding protein
protein.
Length = 1275
Score = 31.1 bits (67), Expect = 2.1
Identities = 20/42 (47%), Positives = 25/42 (59%)
Frame = +1
Query: 325 EPKTEKRSPERTCSHDSRPDPGRAPPLARKSRELTRVSASSS 450
EPKT+ R+P R S S P+ R L+R+SR SASSS
Sbjct: 200 EPKTKSRTPPRRRSSRSSPELTRKARLSRRSR-----SASSS 236
>AB002322-1|BAA20782.3| 2800|Homo sapiens KIAA0324 protein protein.
Length = 2800
Score = 31.1 bits (67), Expect = 2.1
Identities = 20/42 (47%), Positives = 25/42 (59%)
Frame = +1
Query: 325 EPKTEKRSPERTCSHDSRPDPGRAPPLARKSRELTRVSASSS 450
EPKT+ R+P R S S P+ R L+R+SR SASSS
Sbjct: 1725 EPKTKSRTPPRRRSSRSSPELTRKARLSRRSR-----SASSS 1761
>BC103827-1|AAI03828.1| 440|Homo sapiens golgi reassembly stacking
protein 1, 65kDa protein.
Length = 440
Score = 29.9 bits (64), Expect = 4.9
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = +2
Query: 353 NEPARTTHGRILDEPLLSLENPGNSHASPLPAPVSENLIAPKPE 484
+ P+ T R D L+ PG+S PLP P S + AP P+
Sbjct: 240 DSPSLETGSRQSDYMEALLQAPGSSMEDPLPGPGSPSHSAPDPD 283
>BC103826-1|AAI03827.1| 440|Homo sapiens golgi reassembly stacking
protein 1, 65kDa protein.
Length = 440
Score = 29.9 bits (64), Expect = 4.9
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = +2
Query: 353 NEPARTTHGRILDEPLLSLENPGNSHASPLPAPVSENLIAPKPE 484
+ P+ T R D L+ PG+S PLP P S + AP P+
Sbjct: 240 DSPSLETGSRQSDYMEALLQAPGSSMEDPLPGPGSPSHSAPDPD 283
>BC075854-1|AAH75854.1| 440|Homo sapiens golgi reassembly stacking
protein 1, 65kDa protein.
Length = 440
Score = 29.9 bits (64), Expect = 4.9
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = +2
Query: 353 NEPARTTHGRILDEPLLSLENPGNSHASPLPAPVSENLIAPKPE 484
+ P+ T R D L+ PG+S PLP P S + AP P+
Sbjct: 240 DSPSLETGSRQSDYMEALLQAPGSSMEDPLPGPGSPSHSAPDPD 283
>AJ409349-1|CAC35160.1| 440|Homo sapiens golgi perepheral membrane
protein, p65 protein.
Length = 440
Score = 29.9 bits (64), Expect = 4.9
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = +2
Query: 353 NEPARTTHGRILDEPLLSLENPGNSHASPLPAPVSENLIAPKPE 484
+ P+ T R D L+ PG+S PLP P S + AP P+
Sbjct: 240 DSPSLETGSRQSDYMEALLQAPGSSMEDPLPGPGSPSHSAPDPD 283
>AK091168-1|BAC03598.1| 246|Homo sapiens protein ( Homo sapiens
cDNA FLJ33849 fis, clone CTONG2005585, moderately
similar to Rattus norvegicus golgi peripheral membrane
protein p65 ).
Length = 246
Score = 29.5 bits (63), Expect = 6.5
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = +2
Query: 353 NEPARTTHGRILDEPLLSLENPGNSHASPLPAPVSENLIAPKPE 484
+ P+ T R D L+ PG+S PLP P S + AP P+
Sbjct: 167 DSPSLETGSRQSDYMEALLQAPGSSMEDPLPEPGSPSHSAPDPD 210
>X63692-1|CAA45219.1| 1616|Homo sapiens DNA
(cytosine-5-)-methyltransferase protein.
Length = 1616
Score = 29.1 bits (62), Expect = 8.6
Identities = 12/40 (30%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
Frame = +1
Query: 325 EPKTEKRSPERTCSH-DSRPDPGRAPPLARKSRELTRVSA 441
+P ++ R+P R+ S +++P+P +P + RKS T +++
Sbjct: 130 KPLSKPRTPRRSKSDGEAKPEPSPSPRITRKSTRQTTITS 169
>AC010077-1|AAD54507.1| 966|Homo sapiens MTDM_HUMAN [AA 1- 966]
protein.
Length = 966
Score = 29.1 bits (62), Expect = 8.6
Identities = 12/40 (30%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
Frame = +1
Query: 325 EPKTEKRSPERTCSH-DSRPDPGRAPPLARKSRELTRVSA 441
+P ++ R+P R+ S +++P+P +P + RKS T +++
Sbjct: 9 KPLSKPRTPRRSKSDGEAKPEPSPSPRITRKSTRQTTITS 48
>AB209413-1|BAD92650.1| 1606|Homo sapiens DNA
(cytosine-5-)-methyltransferase 1 variant protein.
Length = 1606
Score = 29.1 bits (62), Expect = 8.6
Identities = 12/40 (30%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
Frame = +1
Query: 325 EPKTEKRSPERTCSH-DSRPDPGRAPPLARKSRELTRVSA 441
+P ++ R+P R+ S +++P+P +P + RKS T +++
Sbjct: 117 KPLSKPRTPRRSKSDGEAKPEPSPSPRITRKSTRQTTITS 156
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 57,277,250
Number of Sequences: 237096
Number of extensions: 1125499
Number of successful extensions: 5098
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 4639
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5080
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4366354454
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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