Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021331
         (490 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL021487-10|CAA16357.2| 1592|Caenorhabditis elegans Hypothetical...    30   1.0  
U97002-4|AAB52267.1|  630|Caenorhabditis elegans Hypothetical pr...    29   1.4  
AF067211-1|AAC16986.1|  455|Caenorhabditis elegans Hypothetical ...    29   1.8  
AF043693-11|AAB97541.2|  213|Caenorhabditis elegans Hypothetical...    28   3.2  
Z83236-10|CAB05780.2|  236|Caenorhabditis elegans Hypothetical p...    27   5.5  
Z77662-14|CAI79239.1|  245|Caenorhabditis elegans Hypothetical p...    27   5.5  
Z69791-4|CAA93658.2|  362|Caenorhabditis elegans Hypothetical pr...    27   5.5  
AF031837-1|AAC13673.1|  624|Caenorhabditis elegans GLY5c protein.      27   5.5  
AF031836-1|AAC13672.1|  626|Caenorhabditis elegans GLY5b protein.      27   5.5  
AF031835-1|AAC13671.1|  623|Caenorhabditis elegans GLY5a protein.      27   5.5  
Z83217-5|CAB05684.2| 1565|Caenorhabditis elegans Hypothetical pr...    27   7.3  
AM086627-1|CAJ31105.1| 1565|Caenorhabditis elegans KIN-4 protein...    27   7.3  

>AL021487-10|CAA16357.2| 1592|Caenorhabditis elegans Hypothetical
            protein Y45F10B.10 protein.
          Length = 1592

 Score = 29.9 bits (64), Expect = 1.0
 Identities = 14/30 (46%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
 Frame = +2

Query: 353  NEP-ARTTHGRILDEPLLSLENPGNSHASP 439
            NEP A T+ G I  +P+LS  N GN+ ++P
Sbjct: 1516 NEPVASTSAGEIKKDPILSSNNGGNAQSAP 1545


>U97002-4|AAB52267.1|  630|Caenorhabditis elegans Hypothetical
           protein K09H11.4 protein.
          Length = 630

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 13/41 (31%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = +2

Query: 332 KQRNDHRNEPARTTHGRI-LDEPLLSLENPGNSHASPLPAP 451
           ++++D R +  R  HG+  + E +   ++P  SH SP P P
Sbjct: 505 REKDDFREDHGREDHGKSEVPEKVEHEQHPPQSHGSPHPGP 545


>AF067211-1|AAC16986.1|  455|Caenorhabditis elegans Hypothetical
           protein B0205.10 protein.
          Length = 455

 Score = 29.1 bits (62), Expect = 1.8
 Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
 Frame = +2

Query: 410 ENPGNSHASPLPAPVSE--NLIAPKPEP 487
           E P  +  +P PAPV E   ++AP PEP
Sbjct: 126 ETPAPAPETPAPAPVQETPQVVAPAPEP 153


>AF043693-11|AAB97541.2|  213|Caenorhabditis elegans Hypothetical
           protein C34B2.9 protein.
          Length = 213

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = +2

Query: 395 PLLSLENPGNSHASPLPAPVSENLIAPKPEP 487
           P++S  NP +S  SP+P  VS + I P P P
Sbjct: 109 PIISSNNPPSS--SPVPLHVSSSTIPPPPLP 137


>Z83236-10|CAB05780.2|  236|Caenorhabditis elegans Hypothetical
           protein K10H10.4 protein.
          Length = 236

 Score = 27.5 bits (58), Expect = 5.5
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = +1

Query: 343 RSPERTCSHDSRPDPGRAPPLARKSRELTRVSASSSCFRE 462
           + P R    DS  D    PP  RKS +++RV +    F E
Sbjct: 82  KKPRRKFRFDSDEDEDLPPPPPRKSAKISRVHSEEQGFIE 121


>Z77662-14|CAI79239.1|  245|Caenorhabditis elegans Hypothetical
           protein F47B8.13 protein.
          Length = 245

 Score = 27.5 bits (58), Expect = 5.5
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = +2

Query: 431 ASPLPAPVSENLIAPKPE 484
           A+P PAPV+E  +AP P+
Sbjct: 119 AAPAPAPVAEPALAPSPD 136


>Z69791-4|CAA93658.2|  362|Caenorhabditis elegans Hypothetical
           protein F39D8.3 protein.
          Length = 362

 Score = 27.5 bits (58), Expect = 5.5
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +2

Query: 422 NSHASPLPAPVSENLIAPKPEPD 490
           N+   P+  P SENL AP P+ D
Sbjct: 59  NNITEPVATPTSENLDAPTPQAD 81


>AF031837-1|AAC13673.1|  624|Caenorhabditis elegans GLY5c protein.
          Length = 624

 Score = 27.5 bits (58), Expect = 5.5
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +3

Query: 45  TNGIAPARAALMSGGLYSAIFEGRQHFGLFGPG 143
           T  I P R+  M+GGL+S   E  +  G + PG
Sbjct: 340 TRPIDPVRSPTMAGGLFSIDKEYFEKLGTYDPG 372


>AF031836-1|AAC13672.1|  626|Caenorhabditis elegans GLY5b protein.
          Length = 626

 Score = 27.5 bits (58), Expect = 5.5
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +3

Query: 45  TNGIAPARAALMSGGLYSAIFEGRQHFGLFGPG 143
           T  I P R+  M+GGL+S   E  +  G + PG
Sbjct: 340 TRPIDPVRSPTMAGGLFSIDKEYFEKLGTYDPG 372


>AF031835-1|AAC13671.1|  623|Caenorhabditis elegans GLY5a protein.
          Length = 623

 Score = 27.5 bits (58), Expect = 5.5
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +3

Query: 45  TNGIAPARAALMSGGLYSAIFEGRQHFGLFGPG 143
           T  I P R+  M+GGL+S   E  +  G + PG
Sbjct: 340 TRPIDPVRSPTMAGGLFSIDKEYFEKLGTYDPG 372


>Z83217-5|CAB05684.2| 1565|Caenorhabditis elegans Hypothetical protein
            C10C6.1 protein.
          Length = 1565

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = +2

Query: 113  PPTLRPLRTGIAPAEMLNELLGRTT-KQDDNGDEAN 217
            PPT   LR   A A+   +LL R   KQD+N D  +
Sbjct: 1528 PPTTHHLRGFSAAAQSAQDLLNRLLPKQDNNSDSGS 1563


>AM086627-1|CAJ31105.1| 1565|Caenorhabditis elegans KIN-4 protein
            protein.
          Length = 1565

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = +2

Query: 113  PPTLRPLRTGIAPAEMLNELLGRTT-KQDDNGDEAN 217
            PPT   LR   A A+   +LL R   KQD+N D  +
Sbjct: 1528 PPTTHHLRGFSAAAQSAQDLLNRLLPKQDNNSDSGS 1563


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,754,024
Number of Sequences: 27780
Number of extensions: 157229
Number of successful extensions: 734
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 619
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 722
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 914086948
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)