Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021331
         (490 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g30680.1 68417.m04349 MA3 domain-containing protein similar t...    31   0.42 
At5g20660.1 68418.m02454 24 kDa vacuolar protein, putative simil...    30   0.73 
At4g34740.1 68417.m04930 amidophosphoribosyltransferase / glutam...    29   1.3  
At5g41430.1 68418.m05032 zinc finger (C3HC4-type RING finger) fa...    29   1.7  
At2g45470.1 68415.m05655 fasciclin-like arabinogalactan-protein ...    28   2.9  
At4g28365.1 68417.m04060 plastocyanin-like domain-containing pro...    28   3.9  
At1g79730.1 68414.m09300 hydroxyproline-rich glycoprotein family...    27   6.8  
At1g26150.1 68414.m03192 protein kinase family protein similar t...    27   6.8  
At4g33280.1 68417.m04735 transcriptional factor B3 family protei...    27   9.0  
At4g02430.2 68417.m00330 pre-mRNA splicing factor, putative / SR...    27   9.0  

>At4g30680.1 68417.m04349 MA3 domain-containing protein similar to
           SP|Q03387 Eukaryotic initiation factor (iso)4F subunit
           P82-34 (eIF-(iso)4F P82-34) {Triticum aestivum};
           contains Pfam profile PF02847: MA3 domain
          Length = 263

 Score = 31.1 bits (67), Expect = 0.42
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = +2

Query: 377 GRILDEPLLSLENPGNSHASPLPAPVSENLIAPKPEP 487
           G + D P   ++  G+    P+P+P  + +  PKP+P
Sbjct: 50  GLLNDRPSALVQGNGSQQPKPVPSPTRQTVEKPKPQP 86


>At5g20660.1 68418.m02454 24 kDa vacuolar protein, putative similar
           to 24 kDa vacuolar protein VP24 [Ipomoea batatas]
           gi|5821406|dbj|BAA83809
          Length = 910

 Score = 30.3 bits (65), Expect = 0.73
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = +1

Query: 64  RAPHS*VADYTAPSSRAANTSASSDRDSAGRNV 162
           R  H   +D T PSS +  T ASSD+D+  + V
Sbjct: 2   RKRHPKASDLTEPSSSSKETDASSDKDALDKEV 34


>At4g34740.1 68417.m04930 amidophosphoribosyltransferase / glutamine
           phosphoribosylpyrophosphate amidotransferase /
           phosphoribosyldiphosphate 5-amidotransferase nearly
           identical to amidophosphoribosyltransferase [Arabidopsis
           thaliana] GI:469195; identical to cDNA
           amidophosphoribosyltransferase, partial cds GI:469194
          Length = 561

 Score = 29.5 bits (63), Expect = 1.3
 Identities = 19/50 (38%), Positives = 27/50 (54%)
 Frame = +2

Query: 326 NRKQRNDHRNEPARTTHGRILDEPLLSLENPGNSHASPLPAPVSENLIAP 475
           N+   N++ N+P    H R L  P L   NP +S  SPLPA +S +  +P
Sbjct: 18  NKLSNNNNNNKP----H-RFLRNPFL---NPSSSSFSPLPASISSSSSSP 59


>At5g41430.1 68418.m05032 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 161

 Score = 29.1 bits (62), Expect = 1.7
 Identities = 15/31 (48%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
 Frame = +2

Query: 401 LSLENPGNSHAS--PLPAPVSENLIAPKPEP 487
           L+LE   NSH S  PLP P+   L  P+P+P
Sbjct: 43  LALETHQNSHPSLPPLPVPLPLPLPQPQPQP 73


>At2g45470.1 68415.m05655 fasciclin-like arabinogalactan-protein
           (FLA8)
          Length = 420

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 16/34 (47%), Positives = 18/34 (52%)
 Frame = +2

Query: 386 LDEPLLSLENPGNSHASPLPAPVSENLIAPKPEP 487
           +D  LL  E  G S  SP PAP  E + AP P P
Sbjct: 322 VDNVLLPAELFGKSK-SPSPAPAPEPVTAPTPSP 354


>At4g28365.1 68417.m04060 plastocyanin-like domain-containing
           protein
          Length = 199

 Score = 27.9 bits (59), Expect = 3.9
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +2

Query: 428 HASPLPAPVSENLIAPKPEP 487
           H SP P+PV + L +P P P
Sbjct: 138 HTSPSPSPVHQELSSPGPSP 157


>At1g79730.1 68414.m09300 hydroxyproline-rich glycoprotein family
           protein contains proline-rich extensin domains,
           INTERPRO:IPR002965
          Length = 589

 Score = 27.1 bits (57), Expect = 6.8
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +2

Query: 437 PLPAPVSENLIAPKPEP 487
           PLP P S+N +AP P P
Sbjct: 10  PLPQPPSQNSLAPPPPP 26


>At1g26150.1 68414.m03192 protein kinase family protein similar to
           Pto kinase interactor 1 GI:3668069 from [Lycopersicon
           esculentum]
          Length = 760

 Score = 27.1 bits (57), Expect = 6.8
 Identities = 12/21 (57%), Positives = 13/21 (61%)
 Frame = +2

Query: 428 HASPLPAPVSENLIAPKPEPD 490
           H SP P+P  E L  PKP PD
Sbjct: 254 HPSP-PSPPEETLPPPKPSPD 273


>At4g33280.1 68417.m04735 transcriptional factor B3 family protein
           contains Pfam profile PF02362: B3 DNA binding domain
          Length = 461

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = +3

Query: 414 IPGTHTRLRFQLLFQ 458
           +PG H RL+F LLFQ
Sbjct: 30  LPGFHNRLQFMLLFQ 44


>At4g02430.2 68417.m00330 pre-mRNA splicing factor, putative / SR1
           protein, putative strong similarity to SP|O22315
           Pre-mRNA splicing factor SF2 (SR1 protein) {Arabidopsis
           thaliana}; cDNA NCBI_gi:15810292 supports a truncated
           version while protein evidence supports a longer model.
          Length = 278

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 16/50 (32%), Positives = 25/50 (50%)
 Frame = +1

Query: 325 EPKTEKRSPERTCSHDSRPDPGRAPPLARKSRELTRVSASSSCFRELNRS 474
           + + + RSP R  S+      GR+P  +R SR  +R  + S   + L RS
Sbjct: 194 DSRRDSRSPSRGRSYSKSRSRGRSPSRSR-SRSRSRSKSRSPKAKSLRRS 242


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,428,772
Number of Sequences: 28952
Number of extensions: 153313
Number of successful extensions: 672
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 598
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 668
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 848837888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)