Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021330
(684 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC25B2.11 |pof2||F-box protein Pof2|Schizosaccharomyces pombe|... 35 0.013
SPAC23C4.09c |||DNA-binding TFAR19-related protein|Schizosacchar... 27 1.9
SPCC330.02 |rhp7|SPCC613.14|Rad7 homolog Rhp7|Schizosaccharomyce... 27 2.5
SPAC823.06 |taf3||transcription factor TFIID complex subunit Taf... 27 3.3
SPCC338.16 |pof3||F-box protein Pof3|Schizosaccharomyces pombe|c... 26 5.8
SPAC1420.01c ||SPAC56E4.08c|DUF1752 family protein|Schizosacchar... 25 7.7
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ... 25 7.7
SPBC1703.02 |rsc9||RSC complex subunit Rsc9|Schizosaccharomyces ... 25 7.7
SPCC330.12c |sdh3||succinate dehydrogenase |Schizosaccharomyces ... 25 7.7
>SPBC25B2.11 |pof2||F-box protein Pof2|Schizosaccharomyces pombe|chr
2|||Manual
Length = 463
Score = 34.7 bits (76), Expect = 0.013
Identities = 18/55 (32%), Positives = 29/55 (52%)
Frame = +2
Query: 455 STSQRVCCRAAGIEKT*FSLCKQVTDSSLGRIAQSLKNLEELELGGCCNITDTGL 619
S + + C+ + + S C +TDSSL + + ++L L LG C ITD G+
Sbjct: 267 SDIELITCKFSKLNSLFLSKCIGLTDSSLLSLTKLSQSLTTLHLGHCYEITDIGV 321
Score = 30.7 bits (66), Expect = 0.20
Identities = 11/38 (28%), Positives = 22/38 (57%)
Frame = +2
Query: 515 CKQVTDSSLGRIAQSLKNLEELELGGCCNITDTGLLLI 628
C ++TD + + +S KN+ ++ GGC ++D + I
Sbjct: 313 CYEITDIGVQCLLKSCKNITYIDFGGCLRLSDIAVSAI 350
Score = 25.4 bits (53), Expect = 7.7
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = +2
Query: 548 IAQSLKNLEELELGGCCNITDTGLLLI 628
I+ + NL+ L +G C + DTG++ I
Sbjct: 141 ISDNCPNLKALNIGNCGLVEDTGMVQI 167
>SPAC23C4.09c |||DNA-binding TFAR19-related
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 131
Score = 27.5 bits (58), Expect = 1.9
Identities = 22/71 (30%), Positives = 31/71 (43%), Gaps = 1/71 (1%)
Frame = +3
Query: 57 RKHRSAPYRLHRPHLPSAHVSEPPTEPQGTHIS-RLYPELLALIFERLPVRDRGRAAQVC 233
R+ R A + PS S P + Q + + LL+ I E P RDR R +
Sbjct: 9 RQARLAQLQAEHGSAPSNIASGPSSNQQQQEVQDEMRQNLLSQILEH-PARDRLRRIALV 67
Query: 234 RAWRDAAIEDL 266
R R A+E+L
Sbjct: 68 RKDRAEAVEEL 78
>SPCC330.02 |rhp7|SPCC613.14|Rad7 homolog Rhp7|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 563
Score = 27.1 bits (57), Expect = 2.5
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +2
Query: 515 CKQVTDSSLGRIAQSLKNLEELELGGCCNITD 610
C ++T SL +IAQ NL+ L L C + D
Sbjct: 251 CSKITADSLFQIAQYCPNLQTLHLTYCGQMQD 282
>SPAC823.06 |taf3||transcription factor TFIID complex subunit
Taf3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 155
Score = 26.6 bits (56), Expect = 3.3
Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
Frame = +2
Query: 479 RAAGIEKT*FSLCKQVTDSSLGRI-AQSLKNLEELELG--GCCNITDTGLLL 625
RAAGI++T SL TD ++ I S + + E+G CC++ D L +
Sbjct: 23 RAAGIDRTKVSLLNSFTDITIRYIRLLSETAMAKAEVGRRSCCDLGDLRLAM 74
>SPCC338.16 |pof3||F-box protein Pof3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 577
Score = 25.8 bits (54), Expect = 5.8
Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Frame = +3
Query: 156 RLYP-ELLALIFERLPVRDRGRAAQVCRAWRD 248
R+ P E+L I ++L + + QVC+ WRD
Sbjct: 137 RILPREVLLCILQQLNFKSIVQCMQVCKHWRD 168
>SPAC1420.01c ||SPAC56E4.08c|DUF1752 family
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 580
Score = 25.4 bits (53), Expect = 7.7
Identities = 12/44 (27%), Positives = 22/44 (50%)
Frame = +1
Query: 553 SIVKELGRTRARRLLQHYGYRSAVNNMGT*ESPSIKSAVVWHVN 684
SIV+ + + RLL + +++ E PS+K ++H N
Sbjct: 136 SIVRPQAKRSSSRLLSTDAFSQFISSFSPPEKPSMKDLALFHGN 179
>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 25.4 bits (53), Expect = 7.7
Identities = 14/45 (31%), Positives = 20/45 (44%)
Frame = +3
Query: 21 LGLTDLPSTTTRRKHRSAPYRLHRPHLPSAHVSEPPTEPQGTHIS 155
+G LP+ T+ + R LHR PS P P +H+S
Sbjct: 325 VGSVPLPAPTSSQSLRLGS--LHRSRSPSPRSGRPRRSPSPSHLS 367
>SPBC1703.02 |rsc9||RSC complex subunit Rsc9|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 780
Score = 25.4 bits (53), Expect = 7.7
Identities = 10/27 (37%), Positives = 18/27 (66%)
Frame = -2
Query: 308 QVSVDAERLLRHAKQIFDSCVPPRATN 228
++S + + +L K +F+SC PP+ TN
Sbjct: 124 ELSENRQNVLERVK-VFNSCSPPKPTN 149
>SPCC330.12c |sdh3||succinate dehydrogenase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 180
Score = 25.4 bits (53), Expect = 7.7
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = +3
Query: 45 TTTRRKHRSAPYRLHRPHLPSAHVSEP 125
T T R A R+HRP+ P + EP
Sbjct: 43 TQTEANSRLASQRVHRPNSPHLTIYEP 69
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,624,246
Number of Sequences: 5004
Number of extensions: 50073
Number of successful extensions: 150
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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