Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021330
(684 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_49097| Best HMM Match : F-box (HMM E-Value=1.6e-07) 120 1e-27
SB_34144| Best HMM Match : No HMM Matches (HMM E-Value=.) 41 0.001
SB_22456| Best HMM Match : LRR_1 (HMM E-Value=1.4e-11) 38 0.010
SB_42285| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.031
SB_1687| Best HMM Match : LRR_2 (HMM E-Value=4.6e-07) 35 0.071
SB_9425| Best HMM Match : F-box (HMM E-Value=1.1e-11) 35 0.071
SB_5366| Best HMM Match : LRR_1 (HMM E-Value=0.00075) 34 0.093
SB_7450| Best HMM Match : DUF1324 (HMM E-Value=6.4) 34 0.093
SB_7626| Best HMM Match : LRR_1 (HMM E-Value=1.5e-05) 34 0.12
SB_41867| Best HMM Match : F-box (HMM E-Value=4.5e-08) 33 0.16
SB_40413| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.22
SB_46499| Best HMM Match : F-box (HMM E-Value=1.2e-11) 33 0.22
SB_43342| Best HMM Match : F-box (HMM E-Value=4.1e-09) 33 0.28
SB_41663| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.28
SB_40049| Best HMM Match : LRR_1 (HMM E-Value=0.082) 32 0.38
SB_24761| Best HMM Match : LRR_1 (HMM E-Value=0.0056) 32 0.50
SB_764| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.50
SB_17790| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.66
SB_43663| Best HMM Match : F-box (HMM E-Value=4e-07) 31 0.87
SB_25803| Best HMM Match : PLDc (HMM E-Value=3.9e-12) 31 0.87
SB_22889| Best HMM Match : Adeno_VII (HMM E-Value=2.3) 31 0.87
SB_30271| Best HMM Match : CM_2 (HMM E-Value=9.5) 31 1.1
SB_1509| Best HMM Match : SRR (HMM E-Value=0.22) 31 1.1
SB_40752| Best HMM Match : Ribosomal_L15e (HMM E-Value=2.5) 30 1.5
SB_12740| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.5
SB_13094| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.7
SB_36914| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.5
SB_13832| Best HMM Match : LRR_1 (HMM E-Value=5.4e-10) 29 3.5
SB_12841| Best HMM Match : Amelogenin (HMM E-Value=5.6) 29 3.5
SB_11436| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.5
SB_4015| Best HMM Match : F-box (HMM E-Value=5.9e-11) 29 3.5
SB_5455| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.6
SB_21101| Best HMM Match : F-box (HMM E-Value=0.0024) 29 4.6
SB_37918| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.1
SB_16860| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.1
SB_10665| Best HMM Match : PT (HMM E-Value=6.2) 28 8.1
SB_33702| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.1
>SB_49097| Best HMM Match : F-box (HMM E-Value=1.6e-07)
Length = 190
Score = 120 bits (288), Expect = 1e-27
Identities = 62/129 (48%), Positives = 80/129 (62%)
Frame = +2
Query: 251 SYRRSVWRGVEAALHLRRPAPVLFASLARRGVRKLQVLSLRRGLRDAVAFFTWARIVVFE 430
+Y R VWRGV+A LHLRR P LF SLA+RG+RK+++LSL++ L V + + +
Sbjct: 43 AYSRIVWRGVQARLHLRRSNPFLFPSLAKRGIRKIRILSLKKSLSFVVQSLSCIESLNLK 102
Query: 431 WMLQRH*RSTSQRVCCRAAGIEKT*FSLCKQVTDSSLGRIAQSLKNLEELELGGCCNITD 610
S + SLCKQ+TDSSLG+IA LKNLE L+L GCCNIT+
Sbjct: 103 GCYNVTDTSIGHAFVKYLPTLTVLDLSLCKQITDSSLGKIADFLKNLEFLDLAGCCNITN 162
Query: 611 TGLLLITWG 637
TGLLL +WG
Sbjct: 163 TGLLLCSWG 171
Score = 52.8 bits (121), Expect = 2e-07
Identities = 23/32 (71%), Positives = 26/32 (81%)
Frame = +3
Query: 159 LYPELLALIFERLPVRDRGRAAQVCRAWRDAA 254
L+PE+LALIF L VRD+GR AQVC WRDAA
Sbjct: 12 LFPEILALIFAYLSVRDKGRVAQVCTKWRDAA 43
>SB_34144| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 321
Score = 40.7 bits (91), Expect = 0.001
Identities = 18/43 (41%), Positives = 27/43 (62%)
Frame = +2
Query: 491 IEKT*FSLCKQVTDSSLGRIAQSLKNLEELELGGCCNITDTGL 619
+EK S C ++TD SL I++ +L+ L+L GC ITD G+
Sbjct: 174 LEKLSLSNCLRLTDKSLSAISRKCSSLKTLDLSGCVKITDRGI 216
>SB_22456| Best HMM Match : LRR_1 (HMM E-Value=1.4e-11)
Length = 459
Score = 37.5 bits (83), Expect = 0.010
Identities = 18/38 (47%), Positives = 23/38 (60%)
Frame = +2
Query: 509 SLCKQVTDSSLGRIAQSLKNLEELELGGCCNITDTGLL 622
S C V DS + I + L NL+ L++ C NITD GLL
Sbjct: 382 SSCLHVGDSGMHVITELLTNLKMLKISWCANITDVGLL 419
Score = 35.1 bits (77), Expect = 0.053
Identities = 13/39 (33%), Positives = 25/39 (64%)
Frame = +2
Query: 515 CKQVTDSSLGRIAQSLKNLEELELGGCCNITDTGLLLIT 631
C TD+ L R ++ NL++L++ C ++ D+G+ +IT
Sbjct: 358 CTMATDNFLKRCLPAMVNLQQLDISSCLHVGDSGMHVIT 396
Score = 29.1 bits (62), Expect = 3.5
Identities = 13/38 (34%), Positives = 25/38 (65%)
Frame = +2
Query: 509 SLCKQVTDSSLGRIAQSLKNLEELELGGCCNITDTGLL 622
S CKQ+TD+ + + ++ +E L+L C +IT+T ++
Sbjct: 248 SACKQLTDNGVVSLVKNQSKIETLKL-CCLDITNTSVI 284
Score = 28.3 bits (60), Expect = 6.1
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = +3
Query: 156 RLYPELLALIFERLPVRDRGRAAQVCRAWRDAAIEDL 266
+L E+++ IF LP+ D +A+VC W A+ + L
Sbjct: 18 QLPQEVVSYIFSFLPLADIKSSARVCHLWAKASDDPL 54
Score = 28.3 bits (60), Expect = 6.1
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = +2
Query: 491 IEKT*FSLCKQVTDSSLGRIAQSLKNLEELELGGC 595
+ K S CK + DS++ +A +L ++ L L GC
Sbjct: 164 LSKLDISWCKGLGDSAVKTVATALPSISHLSLAGC 198
>SB_42285| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1153
Score = 35.9 bits (79), Expect = 0.031
Identities = 16/52 (30%), Positives = 28/52 (53%)
Frame = +2
Query: 464 QRVCCRAAGIEKT*FSLCKQVTDSSLGRIAQSLKNLEELELGGCCNITDTGL 619
+ +C + + F C ++TD+++ IA K + L+LG C IT+T L
Sbjct: 218 EELCLKCNLLNHIDFCGCNELTDNAVKSIATHCKKITNLKLGWCLKITETSL 269
>SB_1687| Best HMM Match : LRR_2 (HMM E-Value=4.6e-07)
Length = 483
Score = 34.7 bits (76), Expect = 0.071
Identities = 16/38 (42%), Positives = 22/38 (57%)
Frame = +2
Query: 515 CKQVTDSSLGRIAQSLKNLEELELGGCCNITDTGLLLI 628
C + D L +A S +NL+ L+L C +ITD GL I
Sbjct: 370 CLALDDDGLEAVADSCRNLKTLDLSWCWDITDKGLQYI 407
>SB_9425| Best HMM Match : F-box (HMM E-Value=1.1e-11)
Length = 376
Score = 34.7 bits (76), Expect = 0.071
Identities = 14/39 (35%), Positives = 25/39 (64%)
Frame = +2
Query: 509 SLCKQVTDSSLGRIAQSLKNLEELELGGCCNITDTGLLL 625
S C +VTD++L + + +EEL++G C +T G++L
Sbjct: 176 SNCSRVTDTALEVVIKHCVEIEELDIGKCSAVTGAGVML 214
Score = 31.5 bits (68), Expect = 0.66
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = +2
Query: 515 CKQVTDSSLGRIAQSLKNLEELELGGCCNITDTGLLLI 628
CK +T+ +L + Q+ L L + C +TDT L ++
Sbjct: 152 CKNITNFTLFYVGQNCLRLRTLNISNCSRVTDTALEVV 189
Score = 28.3 bits (60), Expect = 6.1
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = +3
Query: 144 THISRLYPELLALIFERLPVRDRGRAAQVCRAW 242
T S + +L LI L +DR A+ VCR W
Sbjct: 67 TVFSDIPDTVLLLILSHLNTQDRAHASMVCRRW 99
>SB_5366| Best HMM Match : LRR_1 (HMM E-Value=0.00075)
Length = 310
Score = 34.3 bits (75), Expect = 0.093
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = +2
Query: 515 CKQVTDSSLGRIAQSLKNLEELELGGCCNITDTGL 619
C Q+TD S+ IA +L + ++L GC +T GL
Sbjct: 257 CTQITDQSIASIASNLICITNIDLYGCTKVTKCGL 291
Score = 30.3 bits (65), Expect = 1.5
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +2
Query: 524 VTDSSLGRIAQSLKNLEELELGGCCNITDTGLLLI 628
+TD L +I++ L+ L L +G C ITD + I
Sbjct: 234 ITDEGLCKISRHLRELRVLNIGQCTQITDQSIASI 268
>SB_7450| Best HMM Match : DUF1324 (HMM E-Value=6.4)
Length = 400
Score = 34.3 bits (75), Expect = 0.093
Identities = 15/33 (45%), Positives = 21/33 (63%)
Frame = +2
Query: 521 QVTDSSLGRIAQSLKNLEELELGGCCNITDTGL 619
Q+TDS+LG + L LE L+L GC I D+ +
Sbjct: 234 QMTDSALGSLVSHLPELENLDLRGCKQIRDSAV 266
Score = 29.5 bits (63), Expect = 2.7
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +2
Query: 515 CKQVTDSSLGRIAQSLKNLEELELGGCCNITDTGL 619
CKQ+ DS++ +I + L+ L L C ITD L
Sbjct: 258 CKQIRDSAVKKIVRHCPLLKCLALANCPRITDVTL 292
>SB_7626| Best HMM Match : LRR_1 (HMM E-Value=1.5e-05)
Length = 260
Score = 33.9 bits (74), Expect = 0.12
Identities = 17/37 (45%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
Frame = +2
Query: 515 CKQVTDSSLGRIAQS--LKNLEELELGGCCNITDTGL 619
C Q+TD+ L +A + L LE L+L GC N+T GL
Sbjct: 176 CYQLTDAGLRSLASNGGLPTLEFLDLSGCLNVTAQGL 212
>SB_41867| Best HMM Match : F-box (HMM E-Value=4.5e-08)
Length = 607
Score = 33.5 bits (73), Expect = 0.16
Identities = 14/38 (36%), Positives = 23/38 (60%)
Frame = +2
Query: 515 CKQVTDSSLGRIAQSLKNLEELELGGCCNITDTGLLLI 628
C+ VTD +G IA + +L L + GC I+D +L++
Sbjct: 343 CQGVTDIGIGTIASNCPSLAHLNVCGCLAISDLSMLVV 380
Score = 31.5 bits (68), Expect = 0.66
Identities = 14/40 (35%), Positives = 19/40 (47%)
Frame = +2
Query: 509 SLCKQVTDSSLGRIAQSLKNLEELELGGCCNITDTGLLLI 628
S C ++ D + I LE + L GC +TD GL I
Sbjct: 445 SYCTKINDDCVKHIVTECTQLEFISLAGCHRVTDLGLKYI 484
Score = 28.7 bits (61), Expect = 4.6
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = +2
Query: 509 SLCKQVTDSSLGRIAQSLKNLEELELGGCCNITDTGL 619
S C V D+ + +++ NLE L + C ITD +
Sbjct: 257 SFCAGVNDAGIATVSEFCPNLEHLNVRSCQCITDIAI 293
Score = 28.7 bits (61), Expect = 4.6
Identities = 15/46 (32%), Positives = 25/46 (54%)
Frame = +2
Query: 473 CCRAAGIEKT*FSLCKQVTDSSLGRIAQSLKNLEELELGGCCNITD 610
CC +E + C ++T SSL RIAQ+ L+ +++ C + D
Sbjct: 383 CC--TDLECLEIAECLRITHSSLNRIAQNCVKLKYIDMQVCSYLQD 426
>SB_40413| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 603
Score = 33.1 bits (72), Expect = 0.22
Identities = 14/27 (51%), Positives = 19/27 (70%)
Frame = +3
Query: 174 LALIFERLPVRDRGRAAQVCRAWRDAA 254
L L+F+ L +D AAQVC+ WR+AA
Sbjct: 11 LVLVFDFLHPKDLVNAAQVCKLWREAA 37
>SB_46499| Best HMM Match : F-box (HMM E-Value=1.2e-11)
Length = 335
Score = 33.1 bits (72), Expect = 0.22
Identities = 12/38 (31%), Positives = 23/38 (60%)
Frame = +2
Query: 515 CKQVTDSSLGRIAQSLKNLEELELGGCCNITDTGLLLI 628
C+++TD+ + + S+ L+ L L C +T TG++ I
Sbjct: 260 CRRITDTGVEALVHSMAELQGLSLAKCRELTSTGIVTI 297
Score = 30.7 bits (66), Expect = 1.1
Identities = 16/37 (43%), Positives = 20/37 (54%)
Frame = +2
Query: 509 SLCKQVTDSSLGRIAQSLKNLEELELGGCCNITDTGL 619
S C +TD L I + L L+ L L C ITDTG+
Sbjct: 232 SNCTDITDLGLHHIGRHLVRLKYLYLTCCRRITDTGV 268
>SB_43342| Best HMM Match : F-box (HMM E-Value=4.1e-09)
Length = 456
Score = 32.7 bits (71), Expect = 0.28
Identities = 19/53 (35%), Positives = 28/53 (52%)
Frame = +3
Query: 102 PSAHVSEPPTEPQGTHISRLYPELLALIFERLPVRDRGRAAQVCRAWRDAAIE 260
PSA+ S P GT IS L ++ IF L D +AA+VC+ W + + +
Sbjct: 32 PSANKSLP--NXVGTRISELDNPVILKIFSYLSRADLLKAAEVCKRWHELSFD 82
>SB_41663| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 198
Score = 32.7 bits (71), Expect = 0.28
Identities = 16/35 (45%), Positives = 21/35 (60%)
Frame = +3
Query: 138 QGTHISRLYPELLALIFERLPVRDRGRAAQVCRAW 242
Q T I L PE+L IF L +D R +QVC++W
Sbjct: 108 QVTLIHNLPPEILNKIFSYLNPKDLCRTSQVCKSW 142
>SB_40049| Best HMM Match : LRR_1 (HMM E-Value=0.082)
Length = 380
Score = 32.3 bits (70), Expect = 0.38
Identities = 14/49 (28%), Positives = 25/49 (51%)
Frame = +2
Query: 485 AGIEKT*FSLCKQVTDSSLGRIAQSLKNLEELELGGCCNITDTGLLLIT 631
A +E C ++TD L + +NL+ + + C ++TD G L +T
Sbjct: 108 ASMESLNLRQCARITDVGLKYVGMRCQNLKIINISECFSLTDAGFLELT 156
Score = 31.9 bits (69), Expect = 0.50
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = +2
Query: 515 CKQVTDSSLGRIAQSLKNLEELELGGCCNITD 610
C TD + + K+LE L+L GC NITD
Sbjct: 227 CPGFTDEGVKCTLRFFKDLEHLDLSGCLNITD 258
>SB_24761| Best HMM Match : LRR_1 (HMM E-Value=0.0056)
Length = 298
Score = 31.9 bits (69), Expect = 0.50
Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
Frame = +2
Query: 455 STSQRVCCRAAGIEKT*FSLCKQVTDSSLGRIAQS---LKNLEELELGGCCNITDTGL 619
ST + +G++K S C+ +TD + ++ S ++LE LEL C ITD L
Sbjct: 177 STLNHLSLWCSGLQKLSLSHCELITDDGIHQLGASPCATEHLEFLELDNCPLITDNAL 234
Score = 29.1 bits (62), Expect = 3.5
Identities = 14/37 (37%), Positives = 23/37 (62%)
Frame = +2
Query: 509 SLCKQVTDSSLGRIAQSLKNLEELELGGCCNITDTGL 619
+LC+ +TDS+L ++ L++L L C ITD G+
Sbjct: 170 ALCR-ITDSTLNHLSLWCSGLQKLSLSHCELITDDGI 205
>SB_764| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 445
Score = 31.9 bits (69), Expect = 0.50
Identities = 19/53 (35%), Positives = 24/53 (45%)
Frame = +2
Query: 464 QRVCCRAAGIEKT*FSLCKQVTDSSLGRIAQSLKNLEELELGGCCNITDTGLL 622
+ + C + SLC VTD S G I Q L L L C I+D GL+
Sbjct: 346 KEIVCGCPNLVILNLSLCFNVTDKSAGHIVQHCTKLSSLYLVH-CRISDEGLV 397
Score = 28.7 bits (61), Expect = 4.6
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +3
Query: 195 LPVRDRGRAAQVCRAWRD 248
L ++DRGR A VCR W +
Sbjct: 124 LDIKDRGRVACVCRKWHE 141
>SB_17790| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 295
Score = 31.5 bits (68), Expect = 0.66
Identities = 14/33 (42%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Frame = +3
Query: 162 YPEL-LALIFERLPVRDRGRAAQVCRAWRDAAI 257
+P+L L I + L ++D GR QVCR W+++ I
Sbjct: 14 FPDLVLGKILDCLSLQDLGRLPQVCRYWKESMI 46
>SB_43663| Best HMM Match : F-box (HMM E-Value=4e-07)
Length = 717
Score = 31.1 bits (67), Expect = 0.87
Identities = 15/42 (35%), Positives = 19/42 (45%)
Frame = +3
Query: 135 PQGTHISRLYPELLALIFERLPVRDRGRAAQVCRAWRDAAIE 260
P THI+ L L +F L GR A+ C WR A +
Sbjct: 306 PSRTHIAELPESCLLRVFFYLDEAQLGRVARTCTTWRRIAYD 347
>SB_25803| Best HMM Match : PLDc (HMM E-Value=3.9e-12)
Length = 854
Score = 31.1 bits (67), Expect = 0.87
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +2
Query: 515 CKQVTDSSLGRIAQSLKNLEELELGGCCNITDTGL 619
C + D ++ +A++ L L LGGC ITD L
Sbjct: 739 CTSIGDEAVIALAENCPQLMHLNLGGCLQITDRSL 773
>SB_22889| Best HMM Match : Adeno_VII (HMM E-Value=2.3)
Length = 347
Score = 31.1 bits (67), Expect = 0.87
Identities = 19/49 (38%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Frame = +3
Query: 3 SWRDERLGLTDLPSTTTRRKHRSAPYRLHRP-HLPSAHVSEPPTEPQGT 146
SWRD L + ST + + S R RP +LP HVS+ P GT
Sbjct: 102 SWRDYEYALRPI-STLQQPPNPSQSRRRRRPEYLPQPHVSQAQLSPGGT 149
>SB_30271| Best HMM Match : CM_2 (HMM E-Value=9.5)
Length = 665
Score = 30.7 bits (66), Expect = 1.1
Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Frame = +3
Query: 3 SWRDERLGLTDLPSTTTRRKHRSAPYRLHRP-HLPSAHVSEPPTEPQGT 146
SWRD L + ST + + R+ RP +LP HVS+ P GT
Sbjct: 102 SWRDYEYALRPI-STLQQPPNPPQSRRIRRPEYLPQPHVSQAQLSPGGT 149
>SB_1509| Best HMM Match : SRR (HMM E-Value=0.22)
Length = 644
Score = 30.7 bits (66), Expect = 1.1
Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Frame = +3
Query: 3 SWRDERLGLTDLPSTTTRRKHRSAPYRLHRP-HLPSAHVSEPPTEPQGT 146
SWRD L + ST + + R+ RP +LP HVS+ P GT
Sbjct: 233 SWRDYEYALRPI-STLQQPPNPPQSRRIRRPEYLPQPHVSQAQLSPGGT 280
>SB_40752| Best HMM Match : Ribosomal_L15e (HMM E-Value=2.5)
Length = 374
Score = 30.3 bits (65), Expect = 1.5
Identities = 10/20 (50%), Positives = 16/20 (80%)
Frame = +1
Query: 274 WRRSRSASTETCSCTVCILS 333
WR+ R+A++ET C VC+L+
Sbjct: 211 WRKKRAANSETKECDVCLLT 230
>SB_12740| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1306
Score = 30.3 bits (65), Expect = 1.5
Identities = 14/37 (37%), Positives = 18/37 (48%)
Frame = +2
Query: 515 CKQVTDSSLGRIAQSLKNLEELELGGCCNITDTGLLL 625
C+ VTD L I +L+ L L C NITD +
Sbjct: 151 CEMVTDDVLQIIMMCCPSLQHLNLSSCKNITDNAFAI 187
Score = 28.7 bits (61), Expect = 4.6
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = +2
Query: 509 SLCKQVTDSSLGRIAQSLKNLEELELGGC 595
S C+ VTD + R+A S NL L L C
Sbjct: 1093 SWCEDVTDVGISRVATSCVNLRTLSLRQC 1121
>SB_13094| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 380
Score = 29.5 bits (63), Expect = 2.7
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +3
Query: 168 ELLALIFERLPVRDRGRAAQVCRAW 242
+++ +I R+P R AAQVCR W
Sbjct: 20 DIVEIILTRVPGRSLSNAAQVCRLW 44
>SB_36914| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 215
Score = 29.1 bits (62), Expect = 3.5
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +3
Query: 75 PYRLHRPHLPSAHVSEPPTEPQG 143
PY H LP+ H+++PPT +G
Sbjct: 23 PYHQHARALPACHMAKPPTGSEG 45
>SB_13832| Best HMM Match : LRR_1 (HMM E-Value=5.4e-10)
Length = 637
Score = 29.1 bits (62), Expect = 3.5
Identities = 16/40 (40%), Positives = 22/40 (55%)
Frame = +2
Query: 518 KQVTDSSLGRIAQSLKNLEELELGGCCNITDTGLLLITWG 637
+Q+TD + LK L L+L C NIT+ G+L I G
Sbjct: 371 RQLTDRGTTTLCCKLKKLTTLDLRSC-NITNNGMLGIVQG 409
>SB_12841| Best HMM Match : Amelogenin (HMM E-Value=5.6)
Length = 401
Score = 29.1 bits (62), Expect = 3.5
Identities = 18/49 (36%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Frame = +3
Query: 3 SWRDERLGLTDLPSTTTRRKHRSAPYRLHRP-HLPSAHVSEPPTEPQGT 146
SWRD L + ST + + R RP +LP HVS+ P GT
Sbjct: 18 SWRDYEYALRPI-STLQQPPNPPQSRRRRRPEYLPQPHVSQAQLSPGGT 65
>SB_11436| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 640
Score = 29.1 bits (62), Expect = 3.5
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = +2
Query: 515 CKQVTDSSLGRIAQSLKNLEELELGGCCNITDTGL 619
C +TD SL IA K L+ + C +TD GL
Sbjct: 254 CFFITDESLKSIANQCKCLKTFRIRECQQVTDQGL 288
Score = 27.9 bits (59), Expect = 8.1
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +2
Query: 524 VTDSSLGRIAQSLKNLEELELGGCCNITDTGL 619
V D + IAQ+ NL+ L+L C +TD L
Sbjct: 122 VDDRMVVLIAQNCPNLKRLDLKACFKVTDASL 153
>SB_4015| Best HMM Match : F-box (HMM E-Value=5.9e-11)
Length = 130
Score = 29.1 bits (62), Expect = 3.5
Identities = 15/49 (30%), Positives = 23/49 (46%)
Frame = +3
Query: 114 VSEPPTEPQGTHISRLYPELLALIFERLPVRDRGRAAQVCRAWRDAAIE 260
+S + + I RL +L +F L R + A VC+ WRD A +
Sbjct: 14 ISNDSKKQEKPSIERLPDSVLLQVFSFLCQRSLCKLALVCKRWRDIAFD 62
>SB_5455| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 570
Score = 28.7 bits (61), Expect = 4.6
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = +2
Query: 512 LCKQVTDSSLGRIAQSLKNLEELELGGCCNITDTGL 619
L ++ D SL +A + +NL ++ L GC I GL
Sbjct: 324 LFTKIDDDSLACLANNCRNLVDINLAGCERIFSDGL 359
>SB_21101| Best HMM Match : F-box (HMM E-Value=0.0024)
Length = 287
Score = 28.7 bits (61), Expect = 4.6
Identities = 15/53 (28%), Positives = 28/53 (52%)
Frame = +2
Query: 470 VCCRAAGIEKT*FSLCKQVTDSSLGRIAQSLKNLEELELGGCCNITDTGLLLI 628
+CC+ +E + C ++TD S+ +A L+ + L GC +I+D + I
Sbjct: 166 LCCK--DLEIVDLTGCWEITDHSVCSLASFCNKLKVILLNGCYSISDDSVRAI 216
>SB_37918| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 161
Score = 28.3 bits (60), Expect = 6.1
Identities = 14/20 (70%), Positives = 15/20 (75%), Gaps = 1/20 (5%)
Frame = +2
Query: 74 ALQTTPAAFAFRSR-VRAPD 130
AL+TTP AFA RS RAPD
Sbjct: 16 ALETTPCAFALRSTGTRAPD 35
>SB_16860| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 691
Score = 28.3 bits (60), Expect = 6.1
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +2
Query: 530 DSSLGRIAQSLKNLEELELGGCCNITDTGLLLI 628
D+ L I N++ L+L C NITD G+ I
Sbjct: 137 DNLLQVIGDHCHNIQVLKLANCLNITDNGIRAI 169
>SB_10665| Best HMM Match : PT (HMM E-Value=6.2)
Length = 215
Score = 27.9 bits (59), Expect = 8.1
Identities = 14/42 (33%), Positives = 17/42 (40%), Gaps = 5/42 (11%)
Frame = +3
Query: 39 PSTTTRRKHRSAPYRLHRPHLPSAHVS-----EPPTEPQGTH 149
P+ T R H HRPH+ S +P P GTH
Sbjct: 157 PTWTPHRPHMDPTRTPHRPHMDPTRTSHGPHTDPTRNPHGTH 198
>SB_33702| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 479
Score = 27.9 bits (59), Expect = 8.1
Identities = 16/44 (36%), Positives = 21/44 (47%)
Frame = +3
Query: 15 ERLGLTDLPSTTTRRKHRSAPYRLHRPHLPSAHVSEPPTEPQGT 146
+ L L +T R APY H P PSA + P T+ +GT
Sbjct: 226 QSLSLPQRSDSTEGLSVRPAPYS-HLPPCPSAALRTPDTKEEGT 268
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,961,231
Number of Sequences: 59808
Number of extensions: 420328
Number of successful extensions: 1400
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 1220
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1396
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1769412099
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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