Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021330
(684 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g25490.1 68415.m03052 F-box family protein (FBL6) contains si... 41 7e-04
At5g23340.1 68418.m02730 expressed protein 41 9e-04
At3g58530.1 68416.m06524 F-box family protein-related contains w... 40 0.002
At3g56470.1 68416.m06280 F-box family protein similar to F-box p... 37 0.014
At1g21410.1 68414.m02679 F-box family protein similar to SKP1 i... 36 0.019
At5g25350.1 68418.m03007 F-box family protein contains Pfam PF00... 36 0.025
At4g22030.1 68417.m03187 F-box family protein PF0064: F-box doma... 36 0.025
At5g01720.1 68418.m00090 F-box family protein (FBL3) contains si... 36 0.033
At4g17565.1 68417.m02626 F-box family protein contains F-box dom... 35 0.044
At4g07400.1 68417.m01135 F-box family protein (FBL8) (FBL24) con... 35 0.044
At3g54650.1 68416.m06046 F-box family protein (FBL17) contains s... 35 0.044
At1g55000.1 68414.m06282 peptidoglycan-binding LysM domain-conta... 35 0.044
At1g77000.1 68414.m08967 F-box family protein similar to GP|2155... 35 0.058
At2g33190.1 68415.m04066 F-box family protein contains F-box dom... 34 0.076
At1g21760.1 68414.m02724 F-box family protein Contains PF|00646 ... 34 0.076
At5g27920.1 68418.m03354 F-box family protein contains similarit... 33 0.13
At4g22060.1 68417.m03190 F-box family protein contains F-box dom... 32 0.41
At3g07870.1 68416.m00962 F-box family protein contains F-box dom... 32 0.41
At3g27290.1 68416.m03411 F-box family protein-related contains w... 31 0.54
At2g05970.1 68415.m00648 F-box family protein contains F-box dom... 31 0.54
At1g69090.1 68414.m07906 F-box family protein contains F-box dom... 31 0.54
At1g49360.1 68414.m05533 F-box family protein contains Pfam PF00... 31 0.54
At4g33210.1 68417.m04728 F-box family protein (FBL15) contains s... 31 0.71
At3g16210.1 68416.m02046 F-box family protein contains F-box dom... 31 0.71
At3g07550.2 68416.m00902 F-box family protein (FBL12) contains s... 31 0.71
At3g07550.1 68416.m00901 F-box family protein (FBL12) contains s... 31 0.71
At1g57790.1 68414.m06557 F-box family protein contains Pfam PF00... 31 0.71
At1g47056.1 68414.m05221 F-box family protein ; similar to SKP1... 31 0.71
At5g21900.1 68418.m02539 expressed protein 31 0.94
At4g22170.1 68417.m03205 F-box family protein contains F-box dom... 31 0.94
At1g02460.1 68414.m00195 glycoside hydrolase family 28 protein /... 31 0.94
At5g67250.1 68418.m08477 SKP1 interacting partner 2 (SKIP2) iden... 30 1.2
At4g17980.1 68417.m02676 no apical meristem (NAM) family protein... 30 1.2
At4g08980.3 68417.m01481 F-box family protein (FBW2) contains si... 29 2.2
At4g08980.2 68417.m01480 F-box family protein (FBW2) contains si... 29 2.2
At4g08980.1 68417.m01479 F-box family protein (FBW2) contains si... 29 2.2
At4g05490.1 68417.m00830 F-box family protein (FBL22) contains s... 29 2.2
At3g23880.1 68416.m03001 F-box family protein contains F-box dom... 29 2.2
At2g03560.1 68415.m00316 F-box family protein (FBX7) identical t... 29 2.2
At5g66830.1 68418.m08426 F-box family protein contains F-box dom... 29 2.9
At5g55150.1 68418.m06876 F-box family protein similar to unknown... 29 2.9
At5g40470.1 68418.m04908 expressed protein 29 2.9
At4g15475.1 68417.m02365 F-box family protein (FBL4) 99.7% ident... 29 2.9
At3g60350.1 68416.m06749 armadillo/beta-catenin repeat family pr... 29 2.9
At2g43440.1 68415.m05399 F-box family protein contains Pfam PF00... 29 2.9
At2g06030.1 68415.m00660 expressed protein 29 2.9
At5g51000.1 68418.m06323 F-box family protein contains F-box dom... 29 3.8
At4g10695.1 68417.m01749 hypothetical protein 29 3.8
At3g10810.1 68416.m01301 zinc finger (C3HC4-type RING finger) fa... 29 3.8
At4g27750.1 68417.m03987 expressed protein 28 5.0
At4g22180.1 68417.m03206 F-box family protein contains F-box dom... 28 5.0
At2g44900.1 68415.m05589 armadillo/beta-catenin repeat family pr... 28 5.0
At2g17020.1 68415.m01962 F-box family protein (FBL10) contains s... 28 5.0
At5g67140.1 68418.m08464 F-box family protein similar to unknown... 28 6.6
At5g41490.1 68418.m05038 F-box family protein contains Pfam prof... 28 6.6
At5g39250.1 68418.m04754 F-box family protein ; similar to SKP... 28 6.6
At5g25290.1 68418.m03000 F-box family protein contains F-box dom... 28 6.6
At5g01280.1 68418.m00037 expressed protein 28 6.6
At2g13270.1 68415.m01462 hypothetical protein 28 6.6
At3g50080.1 68416.m05475 F-box family protein (FBL16) contains s... 27 8.8
At3g26000.1 68416.m03239 F-box family protein contains Pfam PF00... 27 8.8
At1g55590.1 68414.m06363 F-box family protein ; similar to SKP1... 27 8.8
At1g16940.1 68414.m02055 F-box family protein contains F-box dom... 27 8.8
>At2g25490.1 68415.m03052 F-box family protein (FBL6) contains
similarity to grr1 GI:2407790 from [Glycine max]
Length = 628
Score = 41.1 bits (92), Expect = 7e-04
Identities = 22/48 (45%), Positives = 26/48 (54%)
Frame = +2
Query: 485 AGIEKT*FSLCKQVTDSSLGRIAQSLKNLEELELGGCCNITDTGLLLI 628
A +EK + C +TD L IA+S NL EL L C I D GLL I
Sbjct: 203 AQLEKLELNRCSTITDKGLVAIAKSCPNLTELTLEACSRIGDEGLLAI 250
Score = 36.3 bits (80), Expect = 0.019
Identities = 17/35 (48%), Positives = 22/35 (62%)
Frame = +2
Query: 524 VTDSSLGRIAQSLKNLEELELGGCCNITDTGLLLI 628
+TD+ L IA+ LE+LEL C ITD GL+ I
Sbjct: 190 ITDNGLLEIAEGCAQLEKLELNRCSTITDKGLVAI 224
Score = 33.1 bits (72), Expect = 0.18
Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Frame = +2
Query: 485 AGIEKT*FSLCKQVTDSSLGRI-AQSLKNLEELELGGCCNITDTGLLLI 628
+ + K FS C +TD + I A++ LE L + GC NITD L+ I
Sbjct: 491 SSLVKINFSGCSNLTDRVISAITARNGWTLEVLNIDGCSNITDASLVSI 539
Score = 27.5 bits (58), Expect = 8.8
Identities = 16/39 (41%), Positives = 20/39 (51%)
Frame = +2
Query: 521 QVTDSSLGRIAQSLKNLEELELGGCCNITDTGLLLITWG 637
+V+D L I +S +L L L ITD GLL I G
Sbjct: 163 KVSDLGLRSIGRSCPSLGSLSLWNVSTITDNGLLEIAEG 201
>At5g23340.1 68418.m02730 expressed protein
Length = 405
Score = 40.7 bits (91), Expect = 9e-04
Identities = 17/35 (48%), Positives = 25/35 (71%)
Frame = +2
Query: 515 CKQVTDSSLGRIAQSLKNLEELELGGCCNITDTGL 619
C+ +TD SL +++ ++LE L L GC NITD+GL
Sbjct: 160 CRFITDESLKSLSERCRDLEALGLQGCTNITDSGL 194
Score = 38.3 bits (85), Expect = 0.005
Identities = 16/38 (42%), Positives = 26/38 (68%)
Frame = +2
Query: 515 CKQVTDSSLGRIAQSLKNLEELELGGCCNITDTGLLLI 628
C +V + S+ +AQ KNLE L +GGC +I+D ++L+
Sbjct: 239 CYKVGNESISSLAQFCKNLETLIIGGCRDISDESIMLL 276
Score = 37.5 bits (83), Expect = 0.008
Identities = 16/33 (48%), Positives = 22/33 (66%)
Frame = +2
Query: 515 CKQVTDSSLGRIAQSLKNLEELELGGCCNITDT 613
C ++DSSL I + KNLE L++G C +TDT
Sbjct: 292 CLNISDSSLSCILKQCKNLEALDIGCCEEVTDT 324
Score = 33.9 bits (74), Expect = 0.10
Identities = 18/35 (51%), Positives = 20/35 (57%)
Frame = +2
Query: 524 VTDSSLGRIAQSLKNLEELELGGCCNITDTGLLLI 628
VTDS L I++ K L L L C ITDTGL I
Sbjct: 85 VTDSDLAVISEGFKFLRVLNLHNCKGITDTGLASI 119
Score = 33.1 bits (72), Expect = 0.18
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +2
Query: 509 SLCKQVTDSSLGRIAQSLKNLEELELGGCCNITDTGL 619
S C++++D L +A+ +L L L GC ITD L
Sbjct: 132 SYCRKLSDKGLSAVAEGCHDLRALHLAGCRFITDESL 168
Score = 31.9 bits (69), Expect = 0.41
Identities = 14/41 (34%), Positives = 23/41 (56%)
Frame = +2
Query: 515 CKQVTDSSLGRIAQSLKNLEELELGGCCNITDTGLLLITWG 637
CK +TD+ L I + L L+ L++ C ++D GL + G
Sbjct: 108 CKGITDTGLASIGRCLSLLQFLDVSYCRKLSDKGLSAVAEG 148
Score = 31.9 bits (69), Expect = 0.41
Identities = 10/35 (28%), Positives = 20/35 (57%)
Frame = +2
Query: 515 CKQVTDSSLGRIAQSLKNLEELELGGCCNITDTGL 619
C +TDS L + + + ++ L++ C N+ D G+
Sbjct: 186 CTNITDSGLADLVKGCRKIKSLDINKCSNVGDAGV 220
>At3g58530.1 68416.m06524 F-box family protein-related contains weak
similarity to F-box protein FBL2 (GI:6010699) [Rattus
norvegicus]
Length = 353
Score = 39.5 bits (88), Expect = 0.002
Identities = 17/38 (44%), Positives = 24/38 (63%)
Frame = +2
Query: 515 CKQVTDSSLGRIAQSLKNLEELELGGCCNITDTGLLLI 628
CK +TD S+ +A+S +LE L + C ITD GLL +
Sbjct: 173 CKSLTDKSMQLVAESYPDLESLNITRCVKITDDGLLQV 210
Score = 30.7 bits (66), Expect = 0.94
Identities = 10/36 (27%), Positives = 24/36 (66%)
Frame = +2
Query: 521 QVTDSSLGRIAQSLKNLEELELGGCCNITDTGLLLI 628
+VTD+ + + ++ +++ +L L GC ++TD + L+
Sbjct: 149 RVTDAGIRNLVKNCRHITDLNLSGCKSLTDKSMQLV 184
Score = 29.9 bits (64), Expect = 1.6
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = +2
Query: 491 IEKT*FSLCKQVTDSSLGRIAQSLKNLEELELGGCCNITD 610
+E + C ++TD+ + IA S +LE L L G +TD
Sbjct: 267 LESLNLTWCVRITDAGVNTIANSCTSLEFLSLFGIVGVTD 306
>At3g56470.1 68416.m06280 F-box family protein similar to F-box
protein family, AtFBX7 (GI:20197899) [Arabidopsis
thaliana]
Length = 367
Score = 36.7 bits (81), Expect = 0.014
Identities = 13/30 (43%), Positives = 21/30 (70%)
Frame = +3
Query: 168 ELLALIFERLPVRDRGRAAQVCRAWRDAAI 257
+LL L+ RLP++D RA+ VC+ W +A +
Sbjct: 35 DLLQLVISRLPLKDNIRASAVCKTWHEACV 64
>At1g21410.1 68414.m02679 F-box family protein similar to SKP1
interacting partner 2 (SKIP2) TIGR_Ath1:At5g67250
Length = 360
Score = 36.3 bits (80), Expect = 0.019
Identities = 15/40 (37%), Positives = 25/40 (62%)
Frame = +2
Query: 518 KQVTDSSLGRIAQSLKNLEELELGGCCNITDTGLLLITWG 637
K VTD++L I + ++ L LG C NI+D G++ + +G
Sbjct: 181 KAVTDNALEAIGNNCNQMQSLNLGWCENISDDGVMSLAYG 220
Score = 31.9 bits (69), Expect = 0.41
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = +2
Query: 521 QVTDSSLGRIAQSLKNLEELELGGCCNITDTGLLLIT 631
++TD SL +A +L +L L GC + +DT + +T
Sbjct: 129 KITDRSLYALAHGCPDLTKLNLSGCTSFSDTAIAYLT 165
Score = 28.3 bits (60), Expect = 5.0
Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = +2
Query: 515 CKQVTDSSLGRIAQSLKNLEELELGGCCNITDTGLL-LITW 634
C+ ++D + +A +L L+L GC ITD ++ L W
Sbjct: 206 CENISDDGVMSLAYGCPDLRTLDLCGCVLITDESVVALADW 246
>At5g25350.1 68418.m03007 F-box family protein contains Pfam
PF00646: F-box domain and Pfam PF00560: Leucine Rich
Repeat (6 copies); similar to F-box protein FBL6
(GI:4432860) [Homo sapiens]
Length = 623
Score = 35.9 bits (79), Expect = 0.025
Identities = 18/46 (39%), Positives = 25/46 (54%)
Frame = +2
Query: 491 IEKT*FSLCKQVTDSSLGRIAQSLKNLEELELGGCCNITDTGLLLI 628
IEK S C +TDS L IA++ NL +L + C + + GL I
Sbjct: 195 IEKLDLSRCPGITDSGLVAIAENCVNLSDLTIDSCSGVGNEGLRAI 240
Score = 31.5 bits (68), Expect = 0.54
Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Frame = +2
Query: 488 GIEKT*FSLCKQVTDSSLGRIAQSL-KNLEELELGGCCNITDTGLLLI 628
G+ K S C V+D+++ I+ + LE L L GC NIT+ L+ +
Sbjct: 486 GLVKVNLSECINVSDNTVSAISVCHGRTLESLNLDGCKNITNASLVAV 533
>At4g22030.1 68417.m03187 F-box family protein PF0064: F-box domain;
similar to F-box protein family, AtFBX7 (GI:20197899)
[Arabidopsis thaliana]
Length = 626
Score = 35.9 bits (79), Expect = 0.025
Identities = 17/38 (44%), Positives = 24/38 (63%)
Frame = +3
Query: 141 GTHISRLYPELLALIFERLPVRDRGRAAQVCRAWRDAA 254
G+ S+L +LL ++FERL D RA VC +W DA+
Sbjct: 407 GSSWSKLPSDLLNMVFERLGFADFQRAKSVCPSWLDAS 444
>At5g01720.1 68418.m00090 F-box family protein (FBL3) contains
similarity to leucine-rich repeats containing F-box
protein FBL3 GI:5919219 from [Homo sapiens]
Length = 665
Score = 35.5 bits (78), Expect = 0.033
Identities = 18/59 (30%), Positives = 26/59 (44%)
Frame = +2
Query: 452 RSTSQRVCCRAAGIEKT*FSLCKQVTDSSLGRIAQSLKNLEELELGGCCNITDTGLLLI 628
R V A +E+ CK +TD +G IA K L + L C + D G+ L+
Sbjct: 139 RDADAAVVAEARSLERLKLGRCKMLTDMGIGCIAVGCKKLNTVSLKWCVGVGDLGVGLL 197
Score = 33.9 bits (74), Expect = 0.10
Identities = 16/42 (38%), Positives = 20/42 (47%)
Frame = +2
Query: 512 LCKQVTDSSLGRIAQSLKNLEELELGGCCNITDTGLLLITWG 637
+C +TD L I NL EL+L ITD G+ I G
Sbjct: 440 ICLNITDKGLSYIGMGCSNLRELDLYRSVGITDVGISTIAQG 481
Score = 30.7 bits (66), Expect = 0.94
Identities = 17/39 (43%), Positives = 22/39 (56%)
Frame = +2
Query: 521 QVTDSSLGRIAQSLKNLEELELGGCCNITDTGLLLITWG 637
++ D L I+ L +L L+LG C NITD GL I G
Sbjct: 418 EIDDEGLKSISSCL-SLSSLKLGICLNITDKGLSYIGMG 455
Score = 30.3 bits (65), Expect = 1.2
Identities = 17/46 (36%), Positives = 24/46 (52%)
Frame = +2
Query: 491 IEKT*FSLCKQVTDSSLGRIAQSLKNLEELELGGCCNITDTGLLLI 628
+E S C+ +TD SL +++ L+ E GC NIT GL I
Sbjct: 485 LETINISYCQDITDKSLVSLSKC-SLLQTFESRGCPNITSQGLAAI 529
Score = 27.9 bits (59), Expect = 6.6
Identities = 12/36 (33%), Positives = 21/36 (58%)
Frame = +2
Query: 524 VTDSSLGRIAQSLKNLEELELGGCCNITDTGLLLIT 631
+TD + IAQ +LE + + C +ITD L+ ++
Sbjct: 470 ITDVGISTIAQGCIHLETINISYCQDITDKSLVSLS 505
Score = 27.5 bits (58), Expect = 8.8
Identities = 15/57 (26%), Positives = 30/57 (52%)
Frame = +2
Query: 467 RVCCRAAGIEKT*FSLCKQVTDSSLGRIAQSLKNLEELELGGCCNITDTGLLLITWG 637
R+ + + + S ++ D+ +A++ ++LE L+LG C +TD G+ I G
Sbjct: 119 RLALKCVNLVEIDLSNATEMRDADAAVVAEA-RSLERLKLGRCKMLTDMGIGCIAVG 174
>At4g17565.1 68417.m02626 F-box family protein contains F-box domain
Pfam:PF00646
Length = 378
Score = 35.1 bits (77), Expect = 0.044
Identities = 16/34 (47%), Positives = 21/34 (61%)
Frame = +3
Query: 153 SRLYPELLALIFERLPVRDRGRAAQVCRAWRDAA 254
S L P+LL IFE+L + RA VCR+W A+
Sbjct: 19 SELCPDLLRSIFEQLSFTNLNRAKLVCRSWNSAS 52
>At4g07400.1 68417.m01135 F-box family protein (FBL8) (FBL24)
contains similarity to SKP1 interacting partner 2
GI:10716949 from [Arabidopsis thaliana]; contains Pfam
PF00646: F-box domain
Length = 554
Score = 35.1 bits (77), Expect = 0.044
Identities = 20/61 (32%), Positives = 27/61 (44%)
Frame = +3
Query: 60 KHRSAPYRLHRPHLPSAHVSEPPTEPQGTHISRLYPELLALIFERLPVRDRGRAAQVCRA 239
K R + P LP+ + +IS L E L+LIF+ L D R + VCR
Sbjct: 44 KFRRSKTTFTSPVLPNLREQNSGADEPYDYISNLPDECLSLIFQSLTCADLKRCSLVCRR 103
Query: 240 W 242
W
Sbjct: 104 W 104
Score = 27.5 bits (58), Expect = 8.8
Identities = 12/36 (33%), Positives = 21/36 (58%)
Frame = +2
Query: 524 VTDSSLGRIAQSLKNLEELELGGCCNITDTGLLLIT 631
+ D++ I+ +NL L+L GC I+D G++ T
Sbjct: 151 ICDNAFVMISVRCRNLTRLKLRGCPEISDLGIIGFT 186
>At3g54650.1 68416.m06046 F-box family protein (FBL17) contains
similarity to F-box protein FBL2 GI:6010699 from [Rattus
norvegicus]
Length = 593
Score = 35.1 bits (77), Expect = 0.044
Identities = 18/35 (51%), Positives = 25/35 (71%)
Frame = +2
Query: 524 VTDSSLGRIAQSLKNLEELELGGCCNITDTGLLLI 628
+TD+S+ I+ KNLE L+L G +ITDTGL +I
Sbjct: 365 ITDASVAAISSGYKNLELLDLSG-SSITDTGLGMI 398
>At1g55000.1 68414.m06282 peptidoglycan-binding LysM
domain-containing protein contains Pfam profile PF01476:
LysM domain
Length = 221
Score = 35.1 bits (77), Expect = 0.044
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = +3
Query: 168 ELLALIFERLPVRDRGRAAQVCRAWRDAAIED 263
+ L +IF++L V D RA+ VC+ W A ED
Sbjct: 7 DTLIIIFQKLTVADLARASCVCKVWNSVATED 38
>At1g77000.1 68414.m08967 F-box family protein similar to
GP|21554029| F-box protein AtFBL5 from [Arabidopsis
thaliana]; similar to F-box protein FBL2 GI:6063090 from
[Homo sapiens]
Length = 360
Score = 34.7 bits (76), Expect = 0.058
Identities = 16/41 (39%), Positives = 24/41 (58%)
Frame = +2
Query: 509 SLCKQVTDSSLGRIAQSLKNLEELELGGCCNITDTGLLLIT 631
S ++TD SL +A+ NL +L L GC + +DT L +T
Sbjct: 125 SKSSKITDHSLYSLARGCTNLTKLNLSGCTSFSDTALAHLT 165
>At2g33190.1 68415.m04066 F-box family protein contains F-box domain
Pfam:PF00646
Length = 379
Score = 34.3 bits (75), Expect = 0.076
Identities = 16/30 (53%), Positives = 18/30 (60%)
Frame = +3
Query: 153 SRLYPELLALIFERLPVRDRGRAAQVCRAW 242
S+LYP+LL IFE L D RA VC W
Sbjct: 9 SKLYPDLLRSIFESLSCLDFHRAGTVCSNW 38
>At1g21760.1 68414.m02724 F-box family protein Contains PF|00646
F-box domain. ESTs gb|Z37267, gb|R90412, gb|Z37268 and
gb|T88189 come from this gene similar to SKP1
interacting partner 2 (SKIP2) TIGR_Ath1:At5g67250
Length = 328
Score = 34.3 bits (75), Expect = 0.076
Identities = 26/67 (38%), Positives = 32/67 (47%), Gaps = 3/67 (4%)
Frame = +3
Query: 78 YRLH-RPHLPSAHVSEPPT-EPQGTHISRLYP-ELLALIFERLPVRDRGRAAQVCRAWRD 248
Y +H RP P S P +P H R P ELL +F R+ D GRA+ VCR WR
Sbjct: 34 YGVHVRPVPPFGSTSRKPHFDPALIH--RCLPDELLFEVFARMMPYDLGRASCVCRKWRY 91
Query: 249 AAIEDLF 269
+F
Sbjct: 92 TVRNPMF 98
>At5g27920.1 68418.m03354 F-box family protein contains similarity
to leucine-rich repeats containing F-box protein FBL3
GI:5919219 from [Homo sapiens]
Length = 642
Score = 33.5 bits (73), Expect = 0.13
Identities = 16/35 (45%), Positives = 22/35 (62%)
Frame = +2
Query: 515 CKQVTDSSLGRIAQSLKNLEELELGGCCNITDTGL 619
C VTD ++ +AQS +NL L+L C IT+ GL
Sbjct: 361 CGFVTDVAISAVAQSCRNLGTLKLESCHLITEKGL 395
Score = 32.3 bits (70), Expect = 0.31
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +2
Query: 515 CKQVTDSSLGRIAQSLKNLEELELGGCCNITDTGL 619
C D L +++ K+L L L CC +TDTG+
Sbjct: 464 CAGFGDDGLAALSRGCKSLNRLILSYCCELTDTGV 498
Score = 31.9 bits (69), Expect = 0.41
Identities = 13/33 (39%), Positives = 23/33 (69%)
Frame = +2
Query: 524 VTDSSLGRIAQSLKNLEELELGGCCNITDTGLL 622
V+DSSL ++ S ++L E+ L C ++TD G++
Sbjct: 312 VSDSSLVSLSSSCRSLMEIGLSRCVDVTDIGMI 344
Score = 31.9 bits (69), Expect = 0.41
Identities = 19/43 (44%), Positives = 25/43 (58%)
Frame = +2
Query: 509 SLCKQVTDSSLGRIAQSLKNLEELELGGCCNITDTGLLLITWG 637
S C ++TD+ + +I Q L+ L LEL G NIT GL I G
Sbjct: 488 SYCCELTDTGVEQIRQ-LELLSHLELRGLKNITGVGLAAIASG 529
Score = 31.1 bits (67), Expect = 0.71
Identities = 18/55 (32%), Positives = 30/55 (54%)
Frame = +2
Query: 464 QRVCCRAAGIEKT*FSLCKQVTDSSLGRIAQSLKNLEELELGGCCNITDTGLLLI 628
Q + C + +++ + C V D L I++ NL+ L+LG C NI+D G+ I
Sbjct: 396 QSLGCYSMLVQELDLTDCYGVNDRGLEYISKC-SNLQRLKLGLCTNISDKGIFHI 449
Score = 30.3 bits (65), Expect = 1.2
Identities = 13/39 (33%), Positives = 23/39 (58%)
Frame = +2
Query: 512 LCKQVTDSSLGRIAQSLKNLEELELGGCCNITDTGLLLI 628
LC+ + DS +A KNL ++ L C+++DT L ++
Sbjct: 540 LCENIDDSGFWALAYFSKNLRQINLCN-CSVSDTALCML 577
Score = 27.5 bits (58), Expect = 8.8
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = +2
Query: 509 SLCKQVTDSSLGRIAQSLKNLEELELGGCCNITDTGL 619
S C VTD + +A++ NL+ L L C +TD +
Sbjct: 333 SRCVDVTDIGMISLARNCLNLKTLNLACCGFVTDVAI 369
>At4g22060.1 68417.m03190 F-box family protein contains F-box domain
Pfam:PF00646
Length = 399
Score = 31.9 bits (69), Expect = 0.41
Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Frame = +3
Query: 120 EPPT-EPQGTHISRLYPELLALIFERLPVRDRGRAAQVCRAW 242
+PP+ G+ S+L +LL ++FERL D R VC AW
Sbjct: 2 DPPSLMSDGSSWSKLPLDLLIMVFERLGFVDFQRTKSVCLAW 43
>At3g07870.1 68416.m00962 F-box family protein contains F-box domain
Pfam:PF00646
Length = 417
Score = 31.9 bits (69), Expect = 0.41
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +3
Query: 141 GTHISRLYPELLALIFERLPVRDRGRAAQVCRAWR 245
G + L +++A IF RLP+ R VCR+WR
Sbjct: 22 GGGLESLPEDIIADIFSRLPISSIARLMFVCRSWR 56
>At3g27290.1 68416.m03411 F-box family protein-related contains weak
similarity to PPA [Mus musculus] GP|18568225|gb|AAL75967
Length = 382
Score = 31.5 bits (68), Expect = 0.54
Identities = 25/87 (28%), Positives = 38/87 (43%), Gaps = 4/87 (4%)
Frame = +2
Query: 374 RGLRDAVAF--FTWARIVVFEWMLQRH*RSTSQRVCCRAA--GIEKT*FSLCKQVTDSSL 541
R LRD+V F W I + + LQ S R A G+ C +TD L
Sbjct: 151 RSLRDSVGKEPFFWTSIDLNDSFLQYRVTDESLLKLTRRALGGVRCLNLGGCVGITDYGL 210
Query: 542 GRIAQSLKNLEELELGGCCNITDTGLL 622
++ S +L +L + GC ++ GL+
Sbjct: 211 KQVLASNPHLTKLSVSGCLRLSTAGLV 237
>At2g05970.1 68415.m00648 F-box family protein contains F-box domain
Pfam:PF00646
Length = 377
Score = 31.5 bits (68), Expect = 0.54
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = +3
Query: 153 SRLYPELLALIFERLPVRDRGRAAQVCRAWRDAA 254
S L P++L +FE L D R VC +W A+
Sbjct: 11 SELCPDVLRCVFELLSFSDLNRTRSVCSSWHSAS 44
>At1g69090.1 68414.m07906 F-box family protein contains F-box domain
Pfam:PF00646
Length = 401
Score = 31.5 bits (68), Expect = 0.54
Identities = 14/31 (45%), Positives = 20/31 (64%)
Frame = +3
Query: 153 SRLYPELLALIFERLPVRDRGRAAQVCRAWR 245
S+L +L+ L+FERL D RA VC +W+
Sbjct: 30 SKLPLDLMQLVFERLAFLDFERAKSVCSSWQ 60
>At1g49360.1 68414.m05533 F-box family protein contains Pfam
PF00646: F-box domain
Length = 481
Score = 31.5 bits (68), Expect = 0.54
Identities = 13/29 (44%), Positives = 19/29 (65%)
Frame = +3
Query: 168 ELLALIFERLPVRDRGRAAQVCRAWRDAA 254
+L+ LI RL +D R++ VC+AW D A
Sbjct: 114 DLVRLILSRLSFKDNIRSSTVCKAWGDIA 142
>At4g33210.1 68417.m04728 F-box family protein (FBL15) contains
similarity to F-box protein FBL2 GI:6063090 from [Homo
sapiens]
Length = 942
Score = 31.1 bits (67), Expect = 0.71
Identities = 19/47 (40%), Positives = 25/47 (53%)
Frame = +3
Query: 129 TEPQGTHISRLYPELLALIFERLPVRDRGRAAQVCRAWRDAAIEDLF 269
TE HI L +LL ++F L D R+A VCR WR A+ + F
Sbjct: 184 TEDFEVHID-LTDDLLHMVFSFLNHVDLCRSAMVCRQWRVASAHEDF 229
Score = 27.5 bits (58), Expect = 8.8
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = +2
Query: 491 IEKT*FSLCKQVTDSSLGRIAQSLKNLEELELGGCCNIT 607
+E S C V+D +L IAQ+ NL L C NI+
Sbjct: 394 LESLDVSNCSCVSDETLREIAQACANLHILNASYCPNIS 432
>At3g16210.1 68416.m02046 F-box family protein contains F-box domain
Pfam:PF00646
Length = 360
Score = 31.1 bits (67), Expect = 0.71
Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Frame = +3
Query: 150 ISRLYPELLAL-IFERLPVRDRGRAAQVCRAWRD 248
+S+ PE LA+ I RL ++D R VC+ WRD
Sbjct: 1 MSKFLPEELAIEILVRLSMKDLARFRCVCKTWRD 34
>At3g07550.2 68416.m00902 F-box family protein (FBL12) contains
similarity to F-box protein FBL6 GI:6456737 from [Homo
sapiens]
Length = 395
Score = 31.1 bits (67), Expect = 0.71
Identities = 14/43 (32%), Positives = 24/43 (55%)
Frame = +2
Query: 509 SLCKQVTDSSLGRIAQSLKNLEELELGGCCNITDTGLLLITWG 637
+LC +V S + + +NL++L + C N+ D GLL + G
Sbjct: 303 ALCHEVKISGWEAVGKWCRNLKKLHVNRCRNLCDQGLLALRCG 345
>At3g07550.1 68416.m00901 F-box family protein (FBL12) contains
similarity to F-box protein FBL6 GI:6456737 from [Homo
sapiens]
Length = 395
Score = 31.1 bits (67), Expect = 0.71
Identities = 14/43 (32%), Positives = 24/43 (55%)
Frame = +2
Query: 509 SLCKQVTDSSLGRIAQSLKNLEELELGGCCNITDTGLLLITWG 637
+LC +V S + + +NL++L + C N+ D GLL + G
Sbjct: 303 ALCHEVKISGWEAVGKWCRNLKKLHVNRCRNLCDQGLLALRCG 345
>At1g57790.1 68414.m06557 F-box family protein contains Pfam
PF00646: F-box domain
Length = 352
Score = 31.1 bits (67), Expect = 0.71
Identities = 12/30 (40%), Positives = 21/30 (70%)
Frame = +3
Query: 168 ELLALIFERLPVRDRGRAAQVCRAWRDAAI 257
ELL+ + L ++D RA+ VC++W +AA+
Sbjct: 19 ELLSSVMTFLEIKDNVRASVVCKSWFEAAV 48
>At1g47056.1 68414.m05221 F-box family protein ; similar to SKP1
interacting partner 2 (SKIP2) TIGR_Ath1:At5g67250
Length = 518
Score = 31.1 bits (67), Expect = 0.71
Identities = 16/35 (45%), Positives = 20/35 (57%)
Frame = +3
Query: 138 QGTHISRLYPELLALIFERLPVRDRGRAAQVCRAW 242
Q + S L E LAL+F+ L +R R A VCR W
Sbjct: 36 QPDYTSSLPDECLALVFQFLNSGNRKRCALVCRRW 70
Score = 27.9 bits (59), Expect = 6.6
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = +2
Query: 524 VTDSSLGRIAQSLKNLEELELGGCCNITDTGL 619
+ D +L +I+ +NL+ L+L C +TD G+
Sbjct: 117 IGDEALVKISLRCRNLKRLKLRACRELTDVGM 148
>At5g21900.1 68418.m02539 expressed protein
Length = 544
Score = 30.7 bits (66), Expect = 0.94
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = +2
Query: 515 CKQVTDSSLGRIAQSLKNLEELELGGCCNITDTGLLLITWG 637
C +VTD + I + K LE L++ +TD L IT G
Sbjct: 372 CNEVTDECMWHIGRYCKKLEALDITDLDKLTDKSLEFITEG 412
>At4g22170.1 68417.m03205 F-box family protein contains F-box domain
Pfam:PF00646
Length = 363
Score = 30.7 bits (66), Expect = 0.94
Identities = 15/34 (44%), Positives = 20/34 (58%)
Frame = +3
Query: 153 SRLYPELLALIFERLPVRDRGRAAQVCRAWRDAA 254
S L +LL L+FERL + RA VC +W A+
Sbjct: 11 SDLPHDLLNLVFERLSFANFNRARSVCSSWYSAS 44
>At1g02460.1 68414.m00195 glycoside hydrolase family 28 protein /
polygalacturonase (pectinase) family protein similar to
polygalacturonase PG1 GI:5669846, PG2 GI:5669848 from
(Glycine max); contains PF00295: Glycosyl hydrolases
family 28 (polygalacturonases)
Length = 491
Score = 30.7 bits (66), Expect = 0.94
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +3
Query: 54 RRKHRSAPYRLHRPHLPSAHVSEPPTEPQG 143
+ KH + + +P PS+ +S+PPT P G
Sbjct: 35 KHKHNNHNHHSSKPKPPSSSISQPPTPPPG 64
>At5g67250.1 68418.m08477 SKP1 interacting partner 2 (SKIP2)
identical to SKP1 interacting partner 2 GI:10716949 from
[Arabidopsis thaliana]
Length = 527
Score = 30.3 bits (65), Expect = 1.2
Identities = 10/27 (37%), Positives = 19/27 (70%)
Frame = +2
Query: 515 CKQVTDSSLGRIAQSLKNLEELELGGC 595
C+++TD + A++ KNL++L +G C
Sbjct: 143 CREITDLGMEDFAKNCKNLKKLSVGSC 169
Score = 27.5 bits (58), Expect = 8.8
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +2
Query: 524 VTDSSLGRIAQSLKNLEELELGGCCNITDTGL 619
++D +L I+ NL ++L GC ITD G+
Sbjct: 120 LSDEALAMISVRCLNLTRVKLRGCREITDLGM 151
>At4g17980.1 68417.m02676 no apical meristem (NAM) family protein
NAM (GI:6066595) [Petunia x hybrida]
Length = 262
Score = 30.3 bits (65), Expect = 1.2
Identities = 12/30 (40%), Positives = 20/30 (66%)
Frame = +2
Query: 506 FSLCKQVTDSSLGRIAQSLKNLEELELGGC 595
F+LC+ V + L + ++SLKN E ++G C
Sbjct: 152 FALCRVVKKNELKKNSKSLKNKNEQDIGSC 181
>At4g08980.3 68417.m01481 F-box family protein (FBW2) contains
similarity to N7 protein GI:3273101 from [Medicago
truncatula]
Length = 317
Score = 29.5 bits (63), Expect = 2.2
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Frame = +3
Query: 147 HISRLYPELLALIFERLPVRD-RGRAAQVCRAWRDA 251
H L P+ L LIF LP+++ +VC+AW A
Sbjct: 9 HWDELIPDALGLIFSHLPLQEVLTVVPRVCKAWNRA 44
>At4g08980.2 68417.m01480 F-box family protein (FBW2) contains
similarity to N7 protein GI:3273101 from [Medicago
truncatula]
Length = 317
Score = 29.5 bits (63), Expect = 2.2
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Frame = +3
Query: 147 HISRLYPELLALIFERLPVRD-RGRAAQVCRAWRDA 251
H L P+ L LIF LP+++ +VC+AW A
Sbjct: 9 HWDELIPDALGLIFSHLPLQEVLTVVPRVCKAWNRA 44
>At4g08980.1 68417.m01479 F-box family protein (FBW2) contains
similarity to N7 protein GI:3273101 from [Medicago
truncatula]
Length = 317
Score = 29.5 bits (63), Expect = 2.2
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Frame = +3
Query: 147 HISRLYPELLALIFERLPVRD-RGRAAQVCRAWRDA 251
H L P+ L LIF LP+++ +VC+AW A
Sbjct: 9 HWDELIPDALGLIFSHLPLQEVLTVVPRVCKAWNRA 44
>At4g05490.1 68417.m00830 F-box family protein (FBL22) contains
similarity to N7 protein GI:3273101 from [Medicago
truncatula]
Length = 307
Score = 29.5 bits (63), Expect = 2.2
Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Frame = +3
Query: 93 PHLPSAHVSEPPTEPQGTHISRLYPELLALIFERL-PVRDRGRAAQVCRAWRDAAIEDL 266
P L ++ + E + ++ + L P+LL+ I RL P+ A +VCR+WR + + L
Sbjct: 8 PPLATSQLPVMKGEEKPSNWAELPPDLLSSILLRLSPLEILENARKVCRSWRRVSKDPL 66
>At3g23880.1 68416.m03001 F-box family protein contains F-box domain
Pfam:PF00646
Length = 364
Score = 29.5 bits (63), Expect = 2.2
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = +3
Query: 168 ELLALIFERLPVRDRGRAAQVCRAWRDAAIEDLFGV 275
E++ I RLPV+ R VC +WR E LF +
Sbjct: 17 EMMEEILLRLPVKSLTRFKCVCSSWRSLISETLFAL 52
>At2g03560.1 68415.m00316 F-box family protein (FBX7) identical to
F-box protein family, AtFBX7 (GI:20197899) [Arabidopsis
thaliana]; contains F-box domain PF:00646
Length = 425
Score = 29.5 bits (63), Expect = 2.2
Identities = 15/30 (50%), Positives = 17/30 (56%)
Frame = +3
Query: 153 SRLYPELLALIFERLPVRDRGRAAQVCRAW 242
S+L P+LL I ERL D RA VC W
Sbjct: 385 SKLCPDLLRSILERLSFIDFCRAKTVCSDW 414
>At5g66830.1 68418.m08426 F-box family protein contains F-box domain
Pfam:PF00646
Length = 394
Score = 29.1 bits (62), Expect = 2.9
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +3
Query: 153 SRLYPELLALIFERLPVRDRGRAAQVCRAW 242
S+L +L+ +F+RL D RA VC +W
Sbjct: 21 SKLPSDLMQFVFDRLGFADFQRAKSVCSSW 50
>At5g55150.1 68418.m06876 F-box family protein similar to unknown
protein (dbj|BAA95762.1) ; similar to SKP1 interacting
partner 2 (SKIP2) TIGR_Ath1:At5g67250
Length = 360
Score = 29.1 bits (62), Expect = 2.9
Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = +3
Query: 153 SRLYPELLALIFERL-PVRDRGRAAQVCRAWRDAA 254
S PELL +F L RD A VC +W+D++
Sbjct: 9 SEFLPELLNTVFHNLNDARDILNCATVCSSWKDSS 43
>At5g40470.1 68418.m04908 expressed protein
Length = 496
Score = 29.1 bits (62), Expect = 2.9
Identities = 16/33 (48%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Frame = +2
Query: 536 SLGR-IAQSLKNLEELELGGCCNITDTGLLLIT 631
S+G I LKNLEE+EL C +I D LL ++
Sbjct: 239 SIGEEIGLCLKNLEEIELRTCRSIVDVVLLKVS 271
>At4g15475.1 68417.m02365 F-box family protein (FBL4) 99.7%
identical to F-box protein family, AtFBL4 (GP:21536497)
[Arabidopsis thaliana]; similar to grr1 GI:2407790 from
[Glycine max]
Length = 610
Score = 29.1 bits (62), Expect = 2.9
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +2
Query: 524 VTDSSLGRIAQSLKNLEELELGGCCNITDTGLLLITWG 637
V D L + + K LEEL L C +TD G++ + G
Sbjct: 178 VGDQGLAAVGKFCKQLEELNLRFCEGLTDVGVIDLVVG 215
>At3g60350.1 68416.m06749 armadillo/beta-catenin repeat family
protein / F-box family protein contains Pfam profiles
PF00514: Armadillo/beta-catenin-like repeat, PF00646:
F-box domain; similar to F-box protein FBL2 (GI:6010699)
[Rattus norvegicus]
Length = 928
Score = 29.1 bits (62), Expect = 2.9
Identities = 18/65 (27%), Positives = 28/65 (43%), Gaps = 1/65 (1%)
Frame = +3
Query: 54 RRKHRSAPYRLHRPHLPSAHVSE-PPTEPQGTHISRLYPELLALIFERLPVRDRGRAAQV 230
+R + Y++ P V + P Q + + L + + +F RL RDR A
Sbjct: 7 QRVEDNGKYKVDSPSYTVIGVEDLAPKVQQYVNWTSLPYDTVFHLFTRLNYRDRASLAST 66
Query: 231 CRAWR 245
CR WR
Sbjct: 67 CRTWR 71
Score = 29.1 bits (62), Expect = 2.9
Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
Frame = +2
Query: 515 CKQVTDSSLGRIAQSLKNLEELELGG--CCNITDTGLLLITW 634
C+++TD++L IA + LE L+LG C IT + +I +
Sbjct: 135 CRKITDATLSMIAARHEALESLQLGPDFCERITSDAIRVIAF 176
>At2g43440.1 68415.m05399 F-box family protein contains Pfam
PF00646: F-box domain; contains TIGRFAM TIGR01640 :
F-box protein interaction domain
Length = 791
Score = 29.1 bits (62), Expect = 2.9
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = +3
Query: 138 QGTHISRLYPELLALIFERLPVRDRGRAAQVCRAWRDAAIEDLF 269
+ T+ + PELL IF RLP++ + V R WR LF
Sbjct: 6 ENTNSIYIVPELLEDIFLRLPLKSILKFKTVSRQWRSILESKLF 49
>At2g06030.1 68415.m00660 expressed protein
Length = 243
Score = 29.1 bits (62), Expect = 2.9
Identities = 11/34 (32%), Positives = 22/34 (64%)
Frame = +2
Query: 509 SLCKQVTDSSLGRIAQSLKNLEELELGGCCNITD 610
S C+++++ LG I + +L+ L++ GC +TD
Sbjct: 182 SWCREMSNDLLGYIVDNSSSLKVLKVFGCSQVTD 215
>At5g51000.1 68418.m06323 F-box family protein contains F-box domain
Pfam:PF00646
Length = 378
Score = 28.7 bits (61), Expect = 3.8
Identities = 11/40 (27%), Positives = 20/40 (50%)
Frame = +3
Query: 150 ISRLYPELLALIFERLPVRDRGRAAQVCRAWRDAAIEDLF 269
+S L+P+L+ I R+P+ C+ W D + + F
Sbjct: 4 MSDLFPDLVEEILSRVPITSLKAVKLTCKQWNDLSKDSSF 43
>At4g10695.1 68417.m01749 hypothetical protein
Length = 234
Score = 28.7 bits (61), Expect = 3.8
Identities = 12/20 (60%), Positives = 15/20 (75%)
Frame = +3
Query: 195 LPVRDRGRAAQVCRAWRDAA 254
L ++D RA+ VCRAWR AA
Sbjct: 4 LGLKDNIRASAVCRAWRKAA 23
>At3g10810.1 68416.m01301 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 Zinc
finger, C3HC4 type (RING finger)
Length = 496
Score = 28.7 bits (61), Expect = 3.8
Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Frame = +3
Query: 39 PSTTTRRKHRSAPYRLHRPHLPSAHVSEPP-TEPQGTHISRL 161
P+ + K P PH+ AH ++PP TEP+ H + +
Sbjct: 422 PAPISAAKSHIVPISAPLPHVVFAHAAQPPITEPREPHANEV 463
>At4g27750.1 68417.m03987 expressed protein
Length = 305
Score = 28.3 bits (60), Expect = 5.0
Identities = 16/34 (47%), Positives = 21/34 (61%)
Frame = +2
Query: 317 LFASLARRGVRKLQVLSLRRGLRDAVAFFTWARI 418
L SL + + + LSLR GLRDA A F++ RI
Sbjct: 38 LVTSLNTQRLYRELTLSLRTGLRDACAEFSFLRI 71
>At4g22180.1 68417.m03206 F-box family protein contains F-box domain
Pfam:PF00646
Length = 402
Score = 28.3 bits (60), Expect = 5.0
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = +3
Query: 153 SRLYPELLALIFERLPVRDRGRAAQVCRAWRDAA 254
S L +LL +FERL + RA VC +W +
Sbjct: 22 SELPLDLLTAVFERLSYANFQRAKSVCSSWHSGS 55
>At2g44900.1 68415.m05589 armadillo/beta-catenin repeat family
protein / F-box family protein contains similarity to
F-box protein FBL2 GI:6010699 from [Rattus norvegicus];
contains Pfam profiles PF00514:
Armadillo/beta-catenin-like repeat, PF00646: F-box
domain
Length = 930
Score = 28.3 bits (60), Expect = 5.0
Identities = 19/77 (24%), Positives = 35/77 (45%), Gaps = 2/77 (2%)
Frame = +2
Query: 410 ARIVVFEWMLQRH*RSTSQRVCCRAAGIEKT*FSLCKQVTDSSLGRIAQSLKNLEELELG 589
+R V ++ R S + +A + + CK++TD++L I + LE L+LG
Sbjct: 107 SRCVNLHYLRFRGVESADSLIHLKARNLIEVSGDYCKKITDATLSMIVARHEALESLQLG 166
Query: 590 G--CCNITDTGLLLITW 634
C IT + + +
Sbjct: 167 PDFCERITSDAIKAVAF 183
>At2g17020.1 68415.m01962 F-box family protein (FBL10) contains
similarity to F-box protein Partner of Paired
GI:10441427 from [Drosophila melanogaster]
Length = 656
Score = 28.3 bits (60), Expect = 5.0
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = +2
Query: 518 KQVTDSSLGRIAQSLKNLEELELGGCCNITDTGLLLI 628
++V+D + +A +E + LGG C +TD G I
Sbjct: 311 RRVSDQGMLFLADKCLGMETICLGGFCRVTDAGFKTI 347
>At5g67140.1 68418.m08464 F-box family protein similar to unknown
protein (dbj|BAA78736.1) ; similar to SKP1 interacting
partner 2 (SKIP2) TIGR_Ath1:At5g67250
Length = 228
Score = 27.9 bits (59), Expect = 6.6
Identities = 12/35 (34%), Positives = 22/35 (62%)
Frame = +2
Query: 524 VTDSSLGRIAQSLKNLEELELGGCCNITDTGLLLI 628
+TD SL IA+ L+ + + C ++T+ GLL++
Sbjct: 141 ITDESLFAIAERCHQLKTIGMWCCRHVTERGLLVL 175
>At5g41490.1 68418.m05038 F-box family protein contains Pfam
profile: PF00646 F-box domain
Length = 387
Score = 27.9 bits (59), Expect = 6.6
Identities = 11/42 (26%), Positives = 22/42 (52%)
Frame = +3
Query: 144 THISRLYPELLALIFERLPVRDRGRAAQVCRAWRDAAIEDLF 269
T I+ L +L+ I R+P+R C++W + + ++F
Sbjct: 3 TMITNLRRDLIEEIISRVPLRSMKAVRLTCKSWNNISKSEIF 44
>At5g39250.1 68418.m04754 F-box family protein ; similar to SKP1
interacting partner 2 (SKIP2) TIGR_Ath1:At5g67250
Length = 252
Score = 27.9 bits (59), Expect = 6.6
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = +3
Query: 168 ELLALIFERLPVRDRGRAAQVCRAWRDAAIEDLF 269
E+L +F L D VC+ WRD A +D +
Sbjct: 5 EVLKNVFPLLEGEDLASCMGVCKQWRDIARDDFY 38
>At5g25290.1 68418.m03000 F-box family protein contains F-box domain
Pfam:PF00646
Length = 397
Score = 27.9 bits (59), Expect = 6.6
Identities = 19/59 (32%), Positives = 25/59 (42%), Gaps = 4/59 (6%)
Frame = +3
Query: 153 SRLYPELLALIFERLPVRDRGRAAQVCRAWRDAAIEDLFGVA*KPLCIY----GDLLLY 317
S + ++L +FERL D RA VC W + + PL I GD LY
Sbjct: 15 SEIPMDILRSVFERLSFVDLHRAKIVCSHWYSCSKQSFLRKTRSPLVILFSDDGDCTLY 73
>At5g01280.1 68418.m00037 expressed protein
Length = 460
Score = 27.9 bits (59), Expect = 6.6
Identities = 17/54 (31%), Positives = 26/54 (48%)
Frame = -1
Query: 192 FQI*APTTLDTASRCEFPEAQSGARTRERKANAAGVVCKARYDVFSSSSCSVNR 31
F + AP+ L T + P+ S +RTR A+++ DV SCS +R
Sbjct: 247 FSVEAPSNLRTTLP-DRPQTASSSRTRAFDASSSSRSASTERDVAKRQSCSPSR 299
>At2g13270.1 68415.m01462 hypothetical protein
Length = 378
Score = 27.9 bits (59), Expect = 6.6
Identities = 16/49 (32%), Positives = 25/49 (51%)
Frame = +3
Query: 24 GLTDLPSTTTRRKHRSAPYRLHRPHLPSAHVSEPPTEPQGTHISRLYPE 170
G+T + S+TT H +AP LH P + S PP P + + +P+
Sbjct: 248 GITAISSSTTVTSH-NAPLILHPPPKRLRYSSPPPKPPDIINKTLKFPK 295
>At3g50080.1 68416.m05475 F-box family protein (FBL16) contains
similarity to SKP1 interacting partner 2 GI:10716949
from [Arabidopsis thaliana]; contains Pfam profile:
PF00646 F-box domain
Length = 522
Score = 27.5 bits (58), Expect = 8.8
Identities = 9/27 (33%), Positives = 17/27 (62%)
Frame = +2
Query: 515 CKQVTDSSLGRIAQSLKNLEELELGGC 595
C+++TD + A++ K+L +L G C
Sbjct: 141 CREITDLGMESFARNCKSLRKLSCGSC 167
>At3g26000.1 68416.m03239 F-box family protein contains Pfam
PF00646: F-box domain; similar to SKP1 interacting
partner 2 (SKIP2) TIGR_Ath1:At5g67250
Length = 453
Score = 27.5 bits (58), Expect = 8.8
Identities = 11/38 (28%), Positives = 21/38 (55%)
Frame = +2
Query: 515 CKQVTDSSLGRIAQSLKNLEELELGGCCNITDTGLLLI 628
C ++TD L R+ + + ++ + GC IT G+L +
Sbjct: 274 CCRITDDCLKRVVARNRQVVKIGVPGCTRITIDGILSV 311
>At1g55590.1 68414.m06363 F-box family protein ; similar to SKP1
interacting partner 2 (SKIP2) TIGR_Ath1:At5g67250
Length = 607
Score = 27.5 bits (58), Expect = 8.8
Identities = 10/33 (30%), Positives = 20/33 (60%)
Frame = +2
Query: 518 KQVTDSSLGRIAQSLKNLEELELGGCCNITDTG 616
K++ D + ++++ K LE + LGG ++D G
Sbjct: 296 KRINDMGIFLLSEACKGLESVRLGGFPKVSDAG 328
>At1g16940.1 68414.m02055 F-box family protein contains F-box domain
Pfam:PF00646
Length = 434
Score = 27.5 bits (58), Expect = 8.8
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +3
Query: 150 ISRLYPELLALIFERLPVRDRGRAAQVCRAWR 245
I++L LL IF LP + + + +CR WR
Sbjct: 13 INQLPDSLLCEIFFNLPTEEVVKTSLICRRWR 44
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,240,172
Number of Sequences: 28952
Number of extensions: 283095
Number of successful extensions: 1108
Number of sequences better than 10.0: 63
Number of HSP's better than 10.0 without gapping: 996
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1107
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1447936096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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