Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021329
         (671 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L11247-2|AAK84521.1| 1274|Caenorhabditis elegans Npc1 (human nie...    29   4.0  
AL031627-17|CAA20950.2|  344|Caenorhabditis elegans Hypothetical...    28   5.3  
U00065-9|AAA50738.2| 1009|Caenorhabditis elegans Hypothetical pr...    28   6.9  
U41007-7|AAA82268.3|  516|Caenorhabditis elegans Intramembrane p...    27   9.2  
AF039034-1|AAB94161.2|  423|Caenorhabditis elegans Hypothetical ...    27   9.2  

>L11247-2|AAK84521.1| 1274|Caenorhabditis elegans Npc1 (human niemann
            pick c disease)related protein 2 protein.
          Length = 1274

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 16/63 (25%), Positives = 33/63 (52%)
 Frame = -2

Query: 415  LYRLNLAFLFVTYVSLELFLFFLLMWSFIVFFLPKYFFPFIILSQQVMGIKHNIQSATSV 236
            +Y L +  LFV +V++ LFL   L  S +  F+    +  ++    ++GI  N+ S  ++
Sbjct: 1082 VYTLVVLVLFVAFVTISLFLRVNLAGSLVTVFVLLSSYLHLMEWMYLLGITVNVVSVINM 1141

Query: 235  CIT 227
             ++
Sbjct: 1142 AMS 1144


>AL031627-17|CAA20950.2|  344|Caenorhabditis elegans Hypothetical
           protein Y102A5C.28 protein.
          Length = 344

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +2

Query: 236 YTCCTLNIMFNTHDLLT 286
           YTCC LNI+FN   + T
Sbjct: 268 YTCCVLNIVFNPFSVAT 284


>U00065-9|AAA50738.2| 1009|Caenorhabditis elegans Hypothetical
           protein D1044.6 protein.
          Length = 1009

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +3

Query: 12  PYE*LLPFTSRIEVFILWYYEPMTYLVH 95
           PYE +LP T   E+F  W + PM   +H
Sbjct: 873 PYEDMLPPTEYHEIFNEWCFTPMLASLH 900


>U41007-7|AAA82268.3|  516|Caenorhabditis elegans Intramembrane
           protease (impas)family protein 3 protein.
          Length = 516

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 12/47 (25%), Positives = 24/47 (51%)
 Frame = -3

Query: 372 HWNFFFSFY*CGLLLSSFYQSISFPSLF*VNKSWVLNIIFRVQQVYV 232
           H +F+F ++   ++ +S   S+SF      + +W+ N I     +YV
Sbjct: 327 HMSFYFYYHEESMMYASLLVSLSFGLYHECSGNWISNDILAFASIYV 373


>AF039034-1|AAB94161.2|  423|Caenorhabditis elegans Hypothetical
           protein H22D07.1 protein.
          Length = 423

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 12/41 (29%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
 Frame = -1

Query: 392 FICNIC-IIGTFSFLFTNVVFYCLLFTKVFLSLHYFKSTSH 273
           F+C  C    TFSF   + V  C+   +VF + +     +H
Sbjct: 106 FLCRACAFFSTFSFYLNSFVIACIAIDRVFGAYNISSLNAH 146


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,464,191
Number of Sequences: 27780
Number of extensions: 225168
Number of successful extensions: 733
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 644
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 732
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1518563232
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)