Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021328
         (699 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    23   1.8  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    23   2.4  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    21   9.7  
AM292379-1|CAL23191.2|  376|Tribolium castaneum gustatory recept...    21   9.7  

>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 12/41 (29%), Positives = 20/41 (48%)
 Frame = +1

Query: 319 ETNECYSSSCKNVGRIISCSRY*SW*WNNISSCYCWCVVGF 441
           + NEC S+ C N G  + C +        ++  +C C +GF
Sbjct: 298 DINECLSNPCSNAG-TLDCVQL-------VNDYHCNCKLGF 330



 Score = 21.8 bits (44), Expect = 5.5
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = -2

Query: 236 CADGISNSFCGIYVAQSD 183
           C+DG S S+C   + + D
Sbjct: 172 CSDGYSGSYCQTEINECD 189



 Score = 21.8 bits (44), Expect = 5.5
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = +1

Query: 319 ETNECYSSSCKNVG 360
           E NEC S+ C+N G
Sbjct: 184 EINECDSAPCQNGG 197


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 10/33 (30%), Positives = 16/33 (48%)
 Frame = +2

Query: 191  EQHKCRKSCC*CHPHKLRASWMDKMIQAANGEV 289
            EQ   + +C       +R SW+   + AANG +
Sbjct: 1101 EQPPDKATCTTLTAQTIRVSWVSPPLTAANGVI 1133


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = +3

Query: 636  THCSASYSSSMGPIVSGVVPE 698
            T C    SS+M P  + +VP+
Sbjct: 2282 TECHPDASSTMAPSTTPMVPD 2302


>AM292379-1|CAL23191.2|  376|Tribolium castaneum gustatory receptor
           candidate 58 protein.
          Length = 376

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = +3

Query: 447 RNFFRKAYIQL*FLMVSKKPLIGFT 521
           RN F+ AY QL   +      +G+T
Sbjct: 127 RNLFKNAYFQLVLSISVYSSSVGYT 151


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 157,842
Number of Sequences: 336
Number of extensions: 3277
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18426585
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)