Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021328
(699 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC106.06 |cct4||chaperonin-containing T-complex delta subunit ... 134 9e-33
SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subu... 113 2e-26
SPBC12D12.03 |cct1||chaperonin-containing T-complex alpha subuni... 97 2e-21
SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit ... 95 1e-20
SPBC1A4.08c |cct3||chaperonin-containing T-complex gamma subunit... 92 8e-20
SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit C... 90 3e-19
SPBC646.11 |cct6||chaperonin-containing T-complex zeta subunit C... 78 1e-15
SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit... 73 3e-14
SPAC12G12.04 |hsp60|hsp60|mitochondrial heat shock protein Hsp60... 38 0.001
SPBC1773.09c |mug184||meiotically upregulated gene Mug184|Schizo... 28 1.1
SPBC1778.06c |fim1||fimbrin|Schizosaccharomyces pombe|chr 2|||Ma... 28 1.1
SPAC10F6.12c |mam4||protein-S isoprenylcysteine O-methyltransfer... 27 2.0
SPBC691.02c |||RINT1 family protein|Schizosaccharomyces pombe|ch... 26 4.5
SPAC1142.03c |swi2|SPAC17G6.20c|Swi5 complex subunit Swi2|Schizo... 25 7.9
SPAC31A2.06 |||conserved fungal protein|Schizosaccharomyces pomb... 25 7.9
SPBC776.10c |cog6||Golgi transport complex peripheral subunit Co... 25 7.9
>SPBC106.06 |cct4||chaperonin-containing T-complex delta subunit
Cct4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 527
Score = 134 bits (325), Expect = 9e-33
Identities = 62/84 (73%), Positives = 75/84 (89%)
Frame = +2
Query: 254 MDKMIQAANGEVTITNDGATILKQMSVIHPAAKMLVELSRAQDIEAGDGTTSVVVIAGAL 433
MDKMIQ GEV +TNDGATILK +SV+HPAAKMLV+LS AQD+EAGDGTTSVV++AG++
Sbjct: 44 MDKMIQTGKGEVILTNDGATILKHLSVLHPAAKMLVDLSAAQDVEAGDGTTSVVILAGSM 103
Query: 434 LDSAEKLLQKGIHPTVISDGFQKA 505
L AEKLL+KGIHPTVI++ FQ+A
Sbjct: 104 LACAEKLLKKGIHPTVIAESFQRA 127
Score = 54.0 bits (124), Expect = 2e-08
Identities = 25/60 (41%), Positives = 42/60 (70%)
Frame = +1
Query: 493 FPKSP*LALQVVENMSTPVDLNNEDALLKAAATSLNSKVVSQHSTILAPIAVQAIRAVWD 672
F ++ + ++ + ++L++ ++LL+AA TSLNSK+VSQ+S +LAPIAV A+ V D
Sbjct: 124 FQRAAGFTVDCMKENALAIELSDRESLLRAATTSLNSKIVSQYSNLLAPIAVDAVLKVID 183
Score = 52.8 bits (121), Expect = 5e-08
Identities = 22/33 (66%), Positives = 30/33 (90%)
Frame = +3
Query: 156 YKDKSKPTDIRLSNINAAKAVADAIRTSLGPRG 254
++D+ KP ++RLSNI AA++VADAIRTSLGP+G
Sbjct: 11 FQDREKPQEVRLSNIMAARSVADAIRTSLGPKG 43
>SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subunit
Cct5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 546
Score = 113 bits (273), Expect = 2e-26
Identities = 52/84 (61%), Positives = 69/84 (82%)
Frame = +2
Query: 254 MDKMIQAANGEVTITNDGATILKQMSVIHPAAKMLVELSRAQDIEAGDGTTSVVVIAGAL 433
+DK++ + +GE+T+TNDGATIL QM V H AK+LV+LS++QD E GDGTT VVV+AGAL
Sbjct: 59 LDKILISPDGEITVTNDGATILDQMEVEHQIAKLLVQLSKSQDDEIGDGTTGVVVLAGAL 118
Query: 434 LDSAEKLLQKGIHPTVISDGFQKA 505
L+ AE L+ KGIHP I+DG++KA
Sbjct: 119 LEQAEALIDKGIHPIRIADGYEKA 142
Score = 35.9 bits (79), Expect = 0.006
Identities = 24/63 (38%), Positives = 39/63 (61%), Gaps = 2/63 (3%)
Frame = +1
Query: 493 FPKSP*LALQVVENMSTPVDLNNEDA--LLKAAATSLNSKVVSQHSTILAPIAVQAIRAV 666
+ K+ +A++ ++ +S VD + E+ L ++A TSL SKVVS+ A IAV A+ +V
Sbjct: 139 YEKACQVAVKHLDAISDVVDFSPENTTNLFRSAKTSLGSKVVSKAHDHFANIAVDAVLSV 198
Query: 667 WDL 675
DL
Sbjct: 199 ADL 201
Score = 31.5 bits (68), Expect = 0.12
Identities = 14/21 (66%), Positives = 17/21 (80%)
Frame = +3
Query: 192 SNINAAKAVADAIRTSLGPRG 254
S+I A K VA+ +RTSLGPRG
Sbjct: 38 SHILATKTVANIVRTSLGPRG 58
>SPBC12D12.03 |cct1||chaperonin-containing T-complex alpha subunit
Cct1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 556
Score = 97.1 bits (231), Expect = 2e-21
Identities = 47/85 (55%), Positives = 62/85 (72%)
Frame = +2
Query: 254 MDKMIQAANGEVTITNDGATILKQMSVIHPAAKMLVELSRAQDIEAGDGTTSVVVIAGAL 433
+DKM+ G+VT+TNDGATIL + V HPA K+LVEL++ QD E GDGTTSVV+IA L
Sbjct: 46 LDKMLVDDIGDVTVTNDGATILSLLDVEHPAGKVLVELAQQQDKEVGDGTTSVVIIAAEL 105
Query: 434 LDSAEKLLQKGIHPTVISDGFQKAL 508
L A +L++ IHPT I G++ A+
Sbjct: 106 LRRANELVKNKIHPTTIITGYRLAI 130
Score = 29.9 bits (64), Expect = 0.37
Identities = 12/31 (38%), Positives = 20/31 (64%)
Frame = +3
Query: 162 DKSKPTDIRLSNINAAKAVADAIRTSLGPRG 254
+K D+R N+ A A+A+ +++SLGP G
Sbjct: 15 EKISGEDVRNQNVLATTAIANVVKSSLGPVG 45
>SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit
Cct7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 558
Score = 94.7 bits (225), Expect = 1e-20
Identities = 44/83 (53%), Positives = 60/83 (72%)
Frame = +2
Query: 257 DKMIQAANGEVTITNDGATILKQMSVIHPAAKMLVELSRAQDIEAGDGTTSVVVIAGALL 436
DK++ GEV I+NDGATI+K + ++HPAAK LV+++RAQD E GDGTTSVVV AG LL
Sbjct: 50 DKLMVDDRGEVVISNDGATIMKLLDIVHPAAKTLVDIARAQDAEVGDGTTSVVVFAGELL 109
Query: 437 DSAEKLLQKGIHPTVISDGFQKA 505
A ++ G+ +I G++KA
Sbjct: 110 REARTFVEDGVSSHLIIRGYRKA 132
Score = 34.7 bits (76), Expect = 0.013
Identities = 18/31 (58%), Positives = 20/31 (64%)
Frame = +3
Query: 162 DKSKPTDIRLSNINAAKAVADAIRTSLGPRG 254
D S+ LSNINA AV D IRT+LGP G
Sbjct: 18 DDSQGRGQLLSNINACVAVQDTIRTTLGPLG 48
>SPBC1A4.08c |cct3||chaperonin-containing T-complex gamma subunit
Cct3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 528
Score = 91.9 bits (218), Expect = 8e-20
Identities = 43/85 (50%), Positives = 60/85 (70%)
Frame = +2
Query: 254 MDKMIQAANGEVTITNDGATILKQMSVIHPAAKMLVELSRAQDIEAGDGTTSVVVIAGAL 433
M KM+ G V +TNDG IL+++ V HPAAK ++EL+R QD E GDGTTSV+++AG +
Sbjct: 44 MLKMLLDPVGSVLLTNDGHAILREIEVAHPAAKSMIELARTQDEEVGDGTTSVIILAGEI 103
Query: 434 LDSAEKLLQKGIHPTVISDGFQKAL 508
L +A LL + IHP V+ F++AL
Sbjct: 104 LAAASPLLDRKIHPVVMIRSFKQAL 128
Score = 39.5 bits (88), Expect = 5e-04
Identities = 18/32 (56%), Positives = 23/32 (71%)
Frame = +3
Query: 186 RLSNINAAKAVADAIRTSLGPRGWIR*FKQPM 281
++SNI AAKAVAD IRT LGPR ++ P+
Sbjct: 21 QMSNIQAAKAVADVIRTCLGPRAMLKMLLDPV 52
Score = 34.7 bits (76), Expect = 0.013
Identities = 12/51 (23%), Positives = 34/51 (66%)
Frame = +1
Query: 514 ALQVVENMSTPVDLNNEDALLKAAATSLNSKVVSQHSTILAPIAVQAIRAV 666
AL +++ ++ PV++++ + + T + +K+V++ S ++ +A++A+R V
Sbjct: 131 ALSIIDEITLPVNVDDNAEMFRLIRTCIGTKLVARWSDLMCHLALRAVRTV 181
>SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit
Cct2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 527
Score = 89.8 bits (213), Expect = 3e-19
Identities = 44/85 (51%), Positives = 63/85 (74%), Gaps = 1/85 (1%)
Frame = +2
Query: 254 MDKMIQA-ANGEVTITNDGATILKQMSVIHPAAKMLVELSRAQDIEAGDGTTSVVVIAGA 430
MDK++Q+ ++G++ +TNDGATILK +++ + AAK+LV +S+ QD E GDGTTSV V A
Sbjct: 45 MDKILQSNSSGDIVVTNDGATILKSIALDNAAAKVLVNISKVQDDEVGDGTTSVCVFAAE 104
Query: 431 LLDSAEKLLQKGIHPTVISDGFQKA 505
LL AE ++ IHP VI DG++ A
Sbjct: 105 LLRQAEIMVNAKIHPQVIIDGYRIA 129
Score = 27.1 bits (57), Expect = 2.6
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = +3
Query: 186 RLSNINAAKAVADAIRTSLGPRG 254
RLS+ A AV D ++++LGP+G
Sbjct: 22 RLSSFVGAIAVGDLVKSTLGPKG 44
>SPBC646.11 |cct6||chaperonin-containing T-complex zeta subunit
Cct6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 78.2 bits (184), Expect = 1e-15
Identities = 35/84 (41%), Positives = 53/84 (63%)
Frame = +2
Query: 260 KMIQAANGEVTITNDGATILKQMSVIHPAAKMLVELSRAQDIEAGDGTTSVVVIAGALLD 439
KM+ G + +T DG +L +M + +P A + + + AQD GDGTTSV ++ G LL
Sbjct: 43 KMLVDGAGAIKLTKDGKVLLTEMQIQNPTASCIAKAATAQDDATGDGTTSVCLLVGELLK 102
Query: 440 SAEKLLQKGIHPTVISDGFQKALN 511
AE +++G+HP++ISDGF A N
Sbjct: 103 QAELYIREGLHPSLISDGFNLAKN 126
Score = 31.1 bits (67), Expect = 0.16
Identities = 18/51 (35%), Positives = 29/51 (56%)
Frame = +1
Query: 514 ALQVVENMSTPVDLNNEDALLKAAATSLNSKVVSQHSTILAPIAVQAIRAV 666
AL +++ T +++ E LL A TSL++K+ S+ LAP V AI +
Sbjct: 128 ALTFLDSFKTDFEVDRE-VLLNVAKTSLSTKISSKVVESLAPAVVDAILTI 177
>SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit
Cct8 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 546
Score = 73.3 bits (172), Expect = 3e-14
Identities = 32/73 (43%), Positives = 51/73 (69%)
Frame = +2
Query: 293 ITNDGATILKQMSVIHPAAKMLVELSRAQDIEAGDGTTSVVVIAGALLDSAEKLLQKGIH 472
+TND ATI++++ VIHPAAK++V+ ++ Q+ E GD VVV G LL AE +++ G+
Sbjct: 64 LTNDAATIIRELEVIHPAAKLVVDATQQQENELGDAANFVVVFTGELLAKAENMIRMGLT 123
Query: 473 PTVISDGFQKALN 511
P I+ G++ AL+
Sbjct: 124 PLEIAKGYEMALS 136
Score = 29.5 bits (63), Expect = 0.48
Identities = 16/50 (32%), Positives = 24/50 (48%)
Frame = +3
Query: 105 IMAPKAGGDAIKANSSVYKDKSKPTDIRLSNINAAKAVADAIRTSLGPRG 254
+ PKA G + Y+ D + N NA + +++ RTSLGP G
Sbjct: 3 LRVPKASGPQLFREG--YRIMQGVEDAVIRNCNAIRELSEITRTSLGPNG 50
>SPAC12G12.04 |hsp60|hsp60|mitochondrial heat shock protein
Hsp60|Schizosaccharomyces pombe|chr 1|||Manual
Length = 582
Score = 37.9 bits (84), Expect = 0.001
Identities = 22/87 (25%), Positives = 43/87 (49%), Gaps = 4/87 (4%)
Frame = +2
Query: 263 MIQAANGEVTITNDGATILKQMSVIHP----AAKMLVELSRAQDIEAGDGTTSVVVIAGA 430
+I G IT DG T+ + +S+ A+++ +++ + AGDGTT+ V+ A
Sbjct: 70 LIDQPFGSPKITKDGVTVARSVSLKDKFENLGARLVQDVASKTNEVAGDGTTTATVLTRA 129
Query: 431 LLDSAEKLLQKGIHPTVISDGFQKALN 511
+ + + G +P + G Q A++
Sbjct: 130 IFSETVRNVAAGCNPMDLRRGIQLAVD 156
>SPBC1773.09c |mug184||meiotically upregulated gene
Mug184|Schizosaccharomyces pombe|chr 2|||Manual
Length = 551
Score = 28.3 bits (60), Expect = 1.1
Identities = 14/26 (53%), Positives = 14/26 (53%)
Frame = +3
Query: 585 CNITKFQSSFTTLNYFGTHCSASYSS 662
CNI KF SSF T N F T SS
Sbjct: 276 CNIPKFNSSFKTSNDFFTFTKTEESS 301
>SPBC1778.06c |fim1||fimbrin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 614
Score = 28.3 bits (60), Expect = 1.1
Identities = 27/92 (29%), Positives = 43/92 (46%), Gaps = 1/92 (1%)
Frame = +2
Query: 230 PHKLRASWMDKMIQAANGEVTITNDGATILKQMSVIHPAAKMLVELSRAQDIEAGDGTTS 409
P K+ W + ++AAN T++N K +S +L +L+ A TT
Sbjct: 263 PEKILLRWFNYHLKAANWPRTVSN----FSKDVSDGENYTVLLNQLAPELCSRAPLQTTD 318
Query: 410 VVVIAGALLDSAEKL-LQKGIHPTVISDGFQK 502
V+ A +L +AEKL +K + PT + G K
Sbjct: 319 VLQRAEQVLQNAEKLDCRKYLTPTAMVAGNPK 350
>SPAC10F6.12c |mam4||protein-S isoprenylcysteine O-methyltransferase
Mam4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 236
Score = 27.5 bits (58), Expect = 2.0
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = +1
Query: 328 ECYSSSCKNVGRIISCSRY*SW*WNNISSCYCWCVVGF 441
EC S K+ ++I+C R+ S+ N I S Y +GF
Sbjct: 87 ECLLSGGKSFAKVINCLRFPSFLINFIFSVYQTSALGF 124
>SPBC691.02c |||RINT1 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 678
Score = 26.2 bits (55), Expect = 4.5
Identities = 15/27 (55%), Positives = 15/27 (55%)
Frame = +2
Query: 611 FHNTQLFWHPLQCKLFEQYGTYC*WCG 691
FH TQ PL LFEQ GTY W G
Sbjct: 305 FHYTQ---DPLIIFLFEQNGTYDKWLG 328
>SPAC1142.03c |swi2|SPAC17G6.20c|Swi5 complex subunit
Swi2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 722
Score = 25.4 bits (53), Expect = 7.9
Identities = 14/45 (31%), Positives = 19/45 (42%)
Frame = -3
Query: 385 NILSTR*FYQHFCSWMNNTHLFQNCCSIISYCNFSIGCLNHLIHP 251
NI+ + S NNT + N C S N S+ L +HP
Sbjct: 497 NIIKPNTYKNTILSNENNTPNYSNVCLSTSLINRSLPSLKSTMHP 541
>SPAC31A2.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 542
Score = 25.4 bits (53), Expect = 7.9
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = -3
Query: 448 LSRIQQRTSNNNY*CCSITSFNI 380
LS Q TS NN+ C SI +F I
Sbjct: 177 LSNRQLNTSENNWTCLSIENFGI 199
>SPBC776.10c |cog6||Golgi transport complex peripheral subunit Cog6
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 675
Score = 25.4 bits (53), Expect = 7.9
Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
Frame = -3
Query: 529 RPPVKPI---KGFLETIRNYSWMYAFLKKFLSRIQQRTS 422
RPP K I L++ NY Y FL + +Q++T+
Sbjct: 496 RPPYKGIILMLNVLDSCTNYVGRYTFLNELFEYLQEKTT 534
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,716,336
Number of Sequences: 5004
Number of extensions: 52235
Number of successful extensions: 160
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 160
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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