Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021328
(699 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_52637| Best HMM Match : Cpn60_TCP1 (HMM E-Value=0) 110 1e-24
SB_8111| Best HMM Match : Cpn60_TCP1 (HMM E-Value=0) 95 4e-20
SB_25097| Best HMM Match : No HMM Matches (HMM E-Value=.) 81 8e-16
SB_25096| Best HMM Match : No HMM Matches (HMM E-Value=.) 68 8e-12
SB_4934| Best HMM Match : NAD_binding_2 (HMM E-Value=4.8) 61 1e-09
SB_3960| Best HMM Match : No HMM Matches (HMM E-Value=.) 58 5e-09
SB_22388| Best HMM Match : Extensin_2 (HMM E-Value=0.086) 57 1e-08
SB_57454| Best HMM Match : DUF924 (HMM E-Value=1) 53 2e-07
SB_56262| Best HMM Match : Cpn60_TCP1 (HMM E-Value=6.6e-15) 44 9e-05
SB_49248| Best HMM Match : Cpn60_TCP1 (HMM E-Value=1.6) 38 0.006
SB_41683| Best HMM Match : DEAD (HMM E-Value=1.5e-27) 30 2.1
>SB_52637| Best HMM Match : Cpn60_TCP1 (HMM E-Value=0)
Length = 505
Score = 110 bits (264), Expect = 1e-24
Identities = 53/84 (63%), Positives = 67/84 (79%)
Frame = +2
Query: 254 MDKMIQAANGEVTITNDGATILKQMSVIHPAAKMLVELSRAQDIEAGDGTTSVVVIAGAL 433
MDKM+ + +GEVT+TNDGATIL M V H AK++VELS++QD E GDGTT VVV+AGAL
Sbjct: 55 MDKMMVSPDGEVTVTNDGATILGMMEVDHQIAKLMVELSKSQDNEIGDGTTGVVVLAGAL 114
Query: 434 LDSAEKLLQKGIHPTVISDGFQKA 505
L+ AE+LL GIHP I+DG++ A
Sbjct: 115 LEHAEQLLDWGIHPIRIADGYELA 138
Score = 42.7 bits (96), Expect = 3e-04
Identities = 23/57 (40%), Positives = 41/57 (71%), Gaps = 2/57 (3%)
Frame = +1
Query: 511 LALQVVENMST--PVDLNNEDALLKAAATSLNSKVVSQHSTILAPIAVQAIRAVWDL 675
+AL+ +++++ PVD +N+++L++ A T+L SK+VS+ LA IAV A+ +V DL
Sbjct: 141 IALEHMDSIADNFPVDKDNKESLIQTAMTTLGSKIVSRCHRPLAEIAVDAVLSVADL 197
Score = 30.3 bits (65), Expect = 1.6
Identities = 13/21 (61%), Positives = 18/21 (85%)
Frame = +3
Query: 192 SNINAAKAVADAIRTSLGPRG 254
S+I AA+AVA ++TSLGP+G
Sbjct: 34 SHILAARAVASILKTSLGPKG 54
>SB_8111| Best HMM Match : Cpn60_TCP1 (HMM E-Value=0)
Length = 531
Score = 95.5 bits (227), Expect = 4e-20
Identities = 47/87 (54%), Positives = 63/87 (72%), Gaps = 2/87 (2%)
Frame = +2
Query: 254 MDKMIQA--ANGEVTITNDGATILKQMSVIHPAAKMLVELSRAQDIEAGDGTTSVVVIAG 427
MDK++Q+ NG + +TNDGATILK + + +PAAK+LVELS+ QD E GDGTTSV V+
Sbjct: 45 MDKILQSFGQNGNIQVTNDGATILKSIGIDNPAAKILVELSKVQDDEVGDGTTSVTVLTS 104
Query: 428 ALLDSAEKLLQKGIHPTVISDGFQKAL 508
LL AEKL+ IHP I G++K++
Sbjct: 105 ELLKEAEKLVSCKIHPQTIVAGWRKSV 131
Score = 28.7 bits (61), Expect = 4.8
Identities = 16/49 (32%), Positives = 26/49 (53%)
Frame = +1
Query: 511 LALQVVENMSTPVDLNNEDALLKAAATSLNSKVVSQHSTILAPIAVQAI 657
L V++ S P + L+ A T+L+SK++ QH A +AV A+
Sbjct: 138 LEAAAVDHSSDPEKFRED--LMNIARTTLSSKILVQHRDHFAKLAVDAV 184
>SB_25097| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 118
Score = 81.0 bits (191), Expect = 8e-16
Identities = 35/73 (47%), Positives = 53/73 (72%)
Frame = +2
Query: 293 ITNDGATILKQMSVIHPAAKMLVELSRAQDIEAGDGTTSVVVIAGALLDSAEKLLQKGIH 472
+TNDG IL+++ V HPAAK ++E+SR QD E GDGTTSV+++AG + AE L++ +H
Sbjct: 1 MTNDGNAILREIQVKHPAAKSMIEISRTQDEEVGDGTTSVIILAGEFMSVAEPFLEQQMH 60
Query: 473 PTVISDGFQKALN 511
PT I ++ A++
Sbjct: 61 PTQIIAAYRLAMD 73
>SB_25096| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 315
Score = 67.7 bits (158), Expect = 8e-12
Identities = 29/63 (46%), Positives = 45/63 (71%)
Frame = +2
Query: 323 QMSVIHPAAKMLVELSRAQDIEAGDGTTSVVVIAGALLDSAEKLLQKGIHPTVISDGFQK 502
++ V HPAAK ++E+SR QD E GDGTTSV+++AG + AE L++ +HPT I ++
Sbjct: 208 KIQVKHPAAKSMIEISRTQDEEVGDGTTSVIILAGEFMSVAEPFLEQQMHPTQIIAAYRL 267
Query: 503 ALN 511
A++
Sbjct: 268 AMD 270
>SB_4934| Best HMM Match : NAD_binding_2 (HMM E-Value=4.8)
Length = 186
Score = 60.9 bits (141), Expect = 1e-09
Identities = 27/47 (57%), Positives = 37/47 (78%)
Frame = +3
Query: 114 PKAGGDAIKANSSVYKDKSKPTDIRLSNINAAKAVADAIRTSLGPRG 254
P+A +++ + +KDK KP +IR++NI AAKAVADAIRTSLGP+G
Sbjct: 2 PEAKAGRNQSHKTAFKDKEKPQEIRMTNITAAKAVADAIRTSLGPKG 48
Score = 41.5 bits (93), Expect = 6e-04
Identities = 18/21 (85%), Positives = 19/21 (90%)
Frame = +2
Query: 254 MDKMIQAANGEVTITNDGATI 316
MDKMIQ NG+VTITNDGATI
Sbjct: 49 MDKMIQGGNGDVTITNDGATI 69
>SB_3960| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 762
Score = 58.4 bits (135), Expect = 5e-09
Identities = 26/72 (36%), Positives = 44/72 (61%)
Frame = +2
Query: 290 TITNDGATILKQMSVIHPAAKMLVELSRAQDIEAGDGTTSVVVIAGALLDSAEKLLQKGI 469
T+ G ++ + HP A ++ ++ AQD GDGTTS V+I G LL A+ + +G+
Sbjct: 157 TMNPFGQNGVQNSQIQHPTASLIARVATAQDDITGDGTTSNVMIIGELLKQADLYVSEGL 216
Query: 470 HPTVISDGFQKA 505
HP ++++GF+ A
Sbjct: 217 HPRLVTEGFEVA 228
>SB_22388| Best HMM Match : Extensin_2 (HMM E-Value=0.086)
Length = 724
Score = 57.2 bits (132), Expect = 1e-08
Identities = 23/45 (51%), Positives = 35/45 (77%)
Frame = +2
Query: 254 MDKMIQAANGEVTITNDGATILKQMSVIHPAAKMLVELSRAQDIE 388
MDK+I G+ TI+NDGATI+ + ++HPAAK LV+++++QD E
Sbjct: 680 MDKLIVDGRGKATISNDGATIINLLDIVHPAAKTLVDIAKSQDAE 724
Score = 36.3 bits (80), Expect = 0.024
Identities = 16/31 (51%), Positives = 23/31 (74%)
Frame = +3
Query: 162 DKSKPTDIRLSNINAAKAVADAIRTSLGPRG 254
D S+ +SNI+A + +ADA+RT+LGPRG
Sbjct: 649 DASQGIPQLISNIDACQFIADAVRTTLGPRG 679
>SB_57454| Best HMM Match : DUF924 (HMM E-Value=1)
Length = 144
Score = 53.2 bits (122), Expect = 2e-07
Identities = 26/48 (54%), Positives = 33/48 (68%)
Frame = +2
Query: 365 LSRAQDIEAGDGTTSVVVIAGALLDSAEKLLQKGIHPTVISDGFQKAL 508
LS+ QD E GDGTTSV V+A LL AEKL+ IHP I G++K++
Sbjct: 2 LSKVQDDEVGDGTTSVTVLASELLKEAEKLVSCKIHPQTIVAGWRKSV 49
Score = 29.5 bits (63), Expect = 2.7
Identities = 17/49 (34%), Positives = 26/49 (53%)
Frame = +1
Query: 511 LALQVVENMSTPVDLNNEDALLKAAATSLNSKVVSQHSTILAPIAVQAI 657
L V++ S P D L+ A T+L+SK++ QH A +AV A+
Sbjct: 56 LEAAAVDHSSDPEKFR--DDLMNIARTTLSSKILVQHRDHFAKLAVDAV 102
>SB_56262| Best HMM Match : Cpn60_TCP1 (HMM E-Value=6.6e-15)
Length = 563
Score = 44.4 bits (100), Expect = 9e-05
Identities = 17/56 (30%), Positives = 37/56 (66%)
Frame = +2
Query: 254 MDKMIQAANGEVTITNDGATILKQMSVIHPAAKMLVELSRAQDIEAGDGTTSVVVI 421
+D M+++++G + ITN G+ IL+ +++ +P +M+VE +R+ G G + ++I
Sbjct: 25 LDVMLRSSSGNILITNSGSMILESLTMGNPTERMIVEAARSLSGRTGSGASYFIII 80
>SB_49248| Best HMM Match : Cpn60_TCP1 (HMM E-Value=1.6)
Length = 278
Score = 38.3 bits (85), Expect = 0.006
Identities = 22/79 (27%), Positives = 42/79 (53%), Gaps = 4/79 (5%)
Frame = +2
Query: 263 MIQAANGEVTITNDGATILKQMSVIHP----AAKMLVELSRAQDIEAGDGTTSVVVIAGA 430
+I+ + G IT DG T+ K + + A+++ +++ + EAGDGTT+ V+A +
Sbjct: 95 IIEQSFGGPKITKDGVTVAKAIELKDKYQNIGARLVQDVANNTNEEAGDGTTTATVLARS 154
Query: 431 LLDSAEKLLQKGIHPTVIS 487
+ + KG +P +S
Sbjct: 155 IATEGFLHVSKGANPQEVS 173
>SB_41683| Best HMM Match : DEAD (HMM E-Value=1.5e-27)
Length = 559
Score = 29.9 bits (64), Expect = 2.1
Identities = 20/55 (36%), Positives = 28/55 (50%)
Frame = +2
Query: 344 AAKMLVELSRAQDIEAGDGTTSVVVIAGALLDSAEKLLQKGIHPTVISDGFQKAL 508
A++ML E+SR GD + ++G L EKLL+ +HP I G K L
Sbjct: 238 ASQMLYEVSRL----LGDKSIVASFVSGVDLSRQEKLLKDSLHPPRIVIGTPKRL 288
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,967,056
Number of Sequences: 59808
Number of extensions: 380419
Number of successful extensions: 902
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 759
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 901
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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