Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021328
         (699 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              25   0.69 
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          23   2.1  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      23   2.1  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              23   2.8  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 25.0 bits (52), Expect = 0.69
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = +2

Query: 191  EQHKCRKSCC*CHPHKLRASWMDKMIQAANGEVT 292
            EQ     +C       +R SWM   + AANG +T
Sbjct: 1082 EQPPHDTTCTTLTSQTIRISWMSPPLSAANGVIT 1115


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +3

Query: 156 YKDKSKPTDIRLSNINAAKAVADAIRTSLGPR 251
           Y+   KP +  ++ INA K +  AIR  +GP+
Sbjct: 493 YRLNHKPFNFHIT-INADKPMKAAIRIFIGPK 523


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +3

Query: 156 YKDKSKPTDIRLSNINAAKAVADAIRTSLGPR 251
           Y+   KP +  ++ INA K +  AIR  +GP+
Sbjct: 493 YRLNHKPFNFHIT-INADKPMKAAIRIFIGPK 523


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +2

Query: 284 EVTITNDGATILKQMSVIHPAAKMLVELSRAQDI 385
           E+ + NDG+  L ++ +IH A        R QD+
Sbjct: 358 EIRVFNDGSLYLTKVQLIH-AGNYTCHAVRNQDV 390


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 182,092
Number of Sequences: 438
Number of extensions: 3638
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21439440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)