Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021328
(699 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g18190.1 68416.m02314 chaperonin, putative similar to SWISS-P... 124 8e-29
At1g24510.1 68414.m03086 T-complex protein 1 epsilon subunit, pu... 113 1e-25
At5g26360.1 68418.m03151 chaperonin, putative similar to SWISS-P... 100 2e-21
At3g20050.1 68416.m02536 T-complex protein 1 alpha subunit / TCP... 99 2e-21
At5g20890.1 68418.m02481 chaperonin, putative similar to SWISS-P... 96 2e-20
At3g11830.1 68416.m01450 chaperonin, putative similar to SWISS-P... 89 3e-18
At5g16070.1 68418.m01878 chaperonin, putative similar to SWISS-P... 80 2e-15
At3g02530.1 68416.m00241 chaperonin, putative similar to SWISS-P... 80 2e-15
At3g03960.1 68416.m00415 chaperonin, putative similar to SWISS-P... 79 2e-15
At1g24510.2 68414.m03085 T-complex protein 1 epsilon subunit, pu... 75 3e-14
At5g56500.1 68418.m07051 chaperonin, putative similar to SWISS-P... 48 5e-06
At1g26230.1 68414.m03200 chaperonin, putative similar to SWISS-P... 48 8e-06
At3g13470.1 68416.m01695 chaperonin, putative similar SWISS-PROT... 47 1e-05
At1g55490.2 68414.m06348 RuBisCO subunit binding-protein beta su... 47 1e-05
At1g55490.1 68414.m06347 RuBisCO subunit binding-protein beta su... 47 1e-05
At5g18820.1 68418.m02236 chaperonin, putative similar to SWISS-P... 42 4e-04
At3g13860.1 68416.m01751 chaperonin, putative similar to SWISS-P... 39 0.003
At2g33210.1 68415.m04069 chaperonin, putative similar to SWISS-P... 36 0.026
At2g28000.1 68415.m03393 RuBisCO subunit binding-protein alpha s... 36 0.026
At3g23990.1 68416.m03013 chaperonin (CPN60) (HSP60) identical to... 36 0.034
At1g67760.1 68414.m07732 T-complex protein 1 epsilon subunit, pu... 35 0.045
At1g13320.1 68414.m01546 serine/threonine protein phosphatase 2A... 29 3.9
At5g49770.1 68418.m06164 leucine-rich repeat transmembrane prote... 27 9.0
At4g15380.1 68417.m02350 cytochrome P450 family protein similar ... 27 9.0
At2g43040.1 68415.m05341 calmodulin-binding protein similar to p... 27 9.0
>At3g18190.1 68416.m02314 chaperonin, putative similar to
SWISS-PROT:P50991- T-complex protein 1, delta subunit
(TCP-1-delta) [Homo sapiens]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 536
Score = 124 bits (298), Expect = 8e-29
Identities = 61/84 (72%), Positives = 67/84 (79%)
Frame = +2
Query: 254 MDKMIQAANGEVTITNDGATILKQMSVIHPAAKMLVELSRAQDIEAGDGTTSVVVIAGAL 433
MDKMI ANGEV ITNDGATIL +M V+ PAAKMLVELS++QD AGDGTT+VVVIAGAL
Sbjct: 53 MDKMISTANGEVIITNDGATILNKMEVLQPAAKMLVELSKSQDSAAGDGTTTVVVIAGAL 112
Query: 434 LDSAEKLLQKGIHPTVISDGFQKA 505
L + LL GIHPTVISD KA
Sbjct: 113 LKECQSLLTNGIHPTVISDSLHKA 136
Score = 64.5 bits (150), Expect = 6e-11
Identities = 29/53 (54%), Positives = 44/53 (83%)
Frame = +1
Query: 514 ALQVVENMSTPVDLNNEDALLKAAATSLNSKVVSQHSTILAPIAVQAIRAVWD 672
A+ ++ M+ PV+L + D+L+K+A+TSLNSKVVSQ+ST+LAP+AV A+ +V D
Sbjct: 140 AIDILTAMAVPVELTDRDSLVKSASTSLNSKVVSQYSTLLAPLAVDAVLSVID 192
Score = 48.4 bits (110), Expect = 5e-06
Identities = 27/49 (55%), Positives = 34/49 (69%)
Frame = +3
Query: 108 MAPKAGGDAIKANSSVYKDKSKPTDIRLSNINAAKAVADAIRTSLGPRG 254
MA K G KA S V D + DIR +NIN+A+AV+DA+RTSLGP+G
Sbjct: 8 MASKPRGS--KAESFV--DNKRREDIRFANINSARAVSDAVRTSLGPKG 52
>At1g24510.1 68414.m03086 T-complex protein 1 epsilon subunit,
putative / TCP-1-epsilon, putative / chaperonin,
putative identical to SWISS-PROT:O04450- T-complex
protein 1, epsilon subunit (TCP-1-epsilon) [Arabidopsis
thaliana]; strong similarity to SP|P54411 T-complex
protein 1, epsilon subunit (TCP-1-epsilon) (CCT-epsilon)
(TCP-K36) {Avena sativa}; contains Pfam:PF00118 domain,
TCP-1/cpn60 chaperonin family
Length = 535
Score = 113 bits (271), Expect = 1e-25
Identities = 52/84 (61%), Positives = 69/84 (82%)
Frame = +2
Query: 254 MDKMIQAANGEVTITNDGATILKQMSVIHPAAKMLVELSRAQDIEAGDGTTSVVVIAGAL 433
MDKM+Q +G++TITNDGATIL+QM V + AK++VELSR+QD E GDGTT VVV+AGAL
Sbjct: 53 MDKMLQGPDGDITITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGAL 112
Query: 434 LDSAEKLLQKGIHPTVISDGFQKA 505
L+ AE+ L +GIHP I++G++ A
Sbjct: 113 LEQAERQLDRGIHPIRIAEGYEMA 136
Score = 38.7 bits (86), Expect = 0.004
Identities = 19/42 (45%), Positives = 30/42 (71%)
Frame = +1
Query: 550 DLNNEDALLKAAATSLNSKVVSQHSTILAPIAVQAIRAVWDL 675
D+NN + L++ T+L+SK+V++ LA IAV+A+ AV DL
Sbjct: 154 DVNNYEPLVQTCMTTLSSKIVNRCKRSLAEIAVKAVLAVADL 195
Score = 32.7 bits (71), Expect = 0.24
Identities = 15/32 (46%), Positives = 22/32 (68%)
Frame = +3
Query: 159 KDKSKPTDIRLSNINAAKAVADAIRTSLGPRG 254
K + + D + +NI A KAVA +R+SLGP+G
Sbjct: 21 KTRLRGIDAQKANIAAGKAVARILRSSLGPKG 52
>At5g26360.1 68418.m03151 chaperonin, putative similar to
SWISS-PROT:P50143- T-complex protein 1, gamma subunit
(TCP-1-gamma) [Xenopus laevis]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 555
Score = 99.5 bits (237), Expect = 2e-21
Identities = 47/85 (55%), Positives = 60/85 (70%)
Frame = +2
Query: 254 MDKMIQAANGEVTITNDGATILKQMSVIHPAAKMLVELSRAQDIEAGDGTTSVVVIAGAL 433
M KM+ A G + +TNDG IL+++ V HPAAK ++ELSR QD E GDGTTSV+V+AG +
Sbjct: 44 MLKMLLDAGGGIVVTNDGNAILRELDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEM 103
Query: 434 LDSAEKLLQKGIHPTVISDGFQKAL 508
L AE L+K HPTVI + KAL
Sbjct: 104 LHVAEAFLEKNYHPTVICRAYIKAL 128
Score = 35.1 bits (77), Expect = 0.045
Identities = 15/23 (65%), Positives = 19/23 (82%)
Frame = +3
Query: 195 NINAAKAVADAIRTSLGPRGWIR 263
NI A+KAVAD IRT+LGPR ++
Sbjct: 24 NIQASKAVADIIRTTLGPRSMLK 46
>At3g20050.1 68416.m02536 T-complex protein 1 alpha subunit /
TCP-1-alpha / chaperonin (CCT1) identical to
SWISS-PROT:P28769- T-complex protein 1, alpha subunit
(TCP-1-alpha) [Arabidopsis thaliana]
Length = 545
Score = 99.1 bits (236), Expect = 2e-21
Identities = 48/85 (56%), Positives = 62/85 (72%)
Frame = +2
Query: 254 MDKMIQAANGEVTITNDGATILKQMSVIHPAAKMLVELSRAQDIEAGDGTTSVVVIAGAL 433
+DKM+ G+VTITNDGATIL+ + V HPAAK+LVEL+ QD E GDGTTSVV++A L
Sbjct: 44 LDKMLVDDIGDVTITNDGATILRMLEVEHPAAKVLVELAELQDREVGDGTTSVVIVAAEL 103
Query: 434 LDSAEKLLQKGIHPTVISDGFQKAL 508
L A L++ IHPT I G++ A+
Sbjct: 104 LKRANDLVRNKIHPTSIISGYRLAM 128
Score = 35.1 bits (77), Expect = 0.045
Identities = 14/37 (37%), Positives = 23/37 (62%)
Frame = +3
Query: 144 NSSVYKDKSKPTDIRLSNINAAKAVADAIRTSLGPRG 254
N + D+ D+R N+ A +AV++ ++TSLGP G
Sbjct: 7 NPDISGDRQSGQDVRTQNVMACQAVSNIVKTSLGPVG 43
>At5g20890.1 68418.m02481 chaperonin, putative similar to
SWISS-PROT:P78371- T-complex protein 1, beta subunit
(TCP-1-beta) [Homo sapiens]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 527
Score = 95.9 bits (228), Expect = 2e-20
Identities = 48/86 (55%), Positives = 63/86 (73%), Gaps = 2/86 (2%)
Frame = +2
Query: 254 MDKMIQAANG--EVTITNDGATILKQMSVIHPAAKMLVELSRAQDIEAGDGTTSVVVIAG 427
MDK++Q+ VT+TNDGATILK + + +PAAK+LV++S+ QD E GDGTTSVVV+AG
Sbjct: 43 MDKILQSTGRGHAVTVTNDGATILKSLHIDNPAAKVLVDISKVQDDEVGDGTTSVVVLAG 102
Query: 428 ALLDSAEKLLQKGIHPTVISDGFQKA 505
LL AEKL+ IHP I G++ A
Sbjct: 103 ELLREAEKLVASKIHPMTIIAGYRMA 128
Score = 28.3 bits (60), Expect = 5.2
Identities = 17/49 (34%), Positives = 27/49 (55%)
Frame = +1
Query: 511 LALQVVENMSTPVDLNNEDALLKAAATSLNSKVVSQHSTILAPIAVQAI 657
L +V++N ++ LLK A T+L SK++SQ A +AV A+
Sbjct: 136 LLKRVIDNKDNAEKFRSD--LLKIAMTTLCSKILSQDKEHFAEMAVDAV 182
>At3g11830.1 68416.m01450 chaperonin, putative similar to
SWISS-PROT:P80313 T-complex protein 1, eta subunit
(TCP-1-eta) [Mus musculus]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 557
Score = 89.0 bits (211), Expect = 3e-18
Identities = 37/73 (50%), Positives = 56/73 (76%)
Frame = +2
Query: 254 MDKMIQAANGEVTITNDGATILKQMSVIHPAAKMLVELSRAQDIEAGDGTTSVVVIAGAL 433
MDK+I G VTI+NDGATI+K + ++HPAAK+LV+++++QD E GDGTT+VV++A
Sbjct: 48 MDKLIHDDKGSVTISNDGATIMKLLDIVHPAAKILVDIAKSQDSEVGDGTTTVVLLAAEF 107
Query: 434 LDSAEKLLQKGIH 472
L A+ ++ G+H
Sbjct: 108 LKEAKPFIEDGVH 120
Score = 36.3 bits (80), Expect = 0.020
Identities = 15/22 (68%), Positives = 18/22 (81%)
Frame = +3
Query: 189 LSNINAAKAVADAIRTSLGPRG 254
+SNINA AV D +RT+LGPRG
Sbjct: 26 VSNINACTAVGDVVRTTLGPRG 47
>At5g16070.1 68418.m01878 chaperonin, putative similar to
SWISS-PROT:P80317 T-complex protein 1, zeta subunit
(TCP-1-zeta) [Mus musculus]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 535
Score = 79.8 bits (188), Expect = 2e-15
Identities = 34/82 (41%), Positives = 55/82 (67%)
Frame = +2
Query: 260 KMIQAANGEVTITNDGATILKQMSVIHPAAKMLVELSRAQDIEAGDGTTSVVVIAGALLD 439
KM+ +G++ +T DG T+LK+M + +P A M+ + AQD +GDGTTS V+ G L+
Sbjct: 44 KMLVGGSGDIKLTKDGNTLLKEMQIQNPTAIMIARTAVAQDDISGDGTTSTVIFIGELMK 103
Query: 440 SAEKLLQKGIHPTVISDGFQKA 505
+E+ + +G+HP V+ DGF+ A
Sbjct: 104 QSERCIDEGMHPRVLVDGFEIA 125
Score = 29.9 bits (64), Expect = 1.7
Identities = 11/22 (50%), Positives = 18/22 (81%)
Frame = +3
Query: 198 INAAKAVADAIRTSLGPRGWIR 263
INAAK + D ++++LGP+G I+
Sbjct: 23 INAAKGLQDVLKSNLGPKGTIK 44
>At3g02530.1 68416.m00241 chaperonin, putative similar to
SWISS-PROT:P80317- T-complex protein 1, zeta subunit
(TCP-1-zeta) [Mus musculus]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 535
Score = 79.8 bits (188), Expect = 2e-15
Identities = 34/82 (41%), Positives = 55/82 (67%)
Frame = +2
Query: 260 KMIQAANGEVTITNDGATILKQMSVIHPAAKMLVELSRAQDIEAGDGTTSVVVIAGALLD 439
KM+ +G++ +T DG T+LK+M + +P A M+ + AQD +GDGTTS V+ G L+
Sbjct: 44 KMLVGGSGDIKLTKDGNTLLKEMQIQNPTAIMIARTAVAQDDISGDGTTSTVIFIGELMK 103
Query: 440 SAEKLLQKGIHPTVISDGFQKA 505
+E+ + +G+HP V+ DGF+ A
Sbjct: 104 QSERCIDEGMHPRVLVDGFEIA 125
Score = 29.9 bits (64), Expect = 1.7
Identities = 11/22 (50%), Positives = 18/22 (81%)
Frame = +3
Query: 198 INAAKAVADAIRTSLGPRGWIR 263
INAAK + D ++++LGP+G I+
Sbjct: 23 INAAKGLQDVLKSNLGPKGTIK 44
>At3g03960.1 68416.m00415 chaperonin, putative similar to
SWISS-PROT:P42932- T-complex protein 1, theta subunit
(TCP-1-theta) [Mus musculus]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 549
Score = 79.4 bits (187), Expect = 2e-15
Identities = 36/86 (41%), Positives = 58/86 (67%)
Frame = +2
Query: 254 MDKMIQAANGEVTITNDGATILKQMSVIHPAAKMLVELSRAQDIEAGDGTTSVVVIAGAL 433
M+KM+ ++ +TND ATI+ ++ + HPAAK+LV ++AQ E GDG + AG L
Sbjct: 52 MNKMVINHLDKLFVTNDAATIVNELEIQHPAAKLLVLAAKAQQEEIGDGANLTISFAGEL 111
Query: 434 LDSAEKLLQKGIHPTVISDGFQKALN 511
L +AE+L++ G+HP+ I G+ KA++
Sbjct: 112 LQNAEELIRMGLHPSEIISGYTKAVS 137
Score = 27.9 bits (59), Expect = 6.8
Identities = 15/45 (33%), Positives = 23/45 (51%)
Frame = +3
Query: 156 YKDKSKPTDIRLSNINAAKAVADAIRTSLGPRGWIR*FKQPMEKL 290
Y+ S + + NI A K ++ RTSLGP G + ++KL
Sbjct: 19 YRHLSGLDEAVIKNIEACKELSTITRTSLGPNGMNKMVINHLDKL 63
>At1g24510.2 68414.m03085 T-complex protein 1 epsilon subunit,
putative / TCP-1-epsilon, putative / chaperonin,
putative identical to SWISS-PROT:O04450- T-complex
protein 1, epsilon subunit (TCP-1-epsilon) [Arabidopsis
thaliana]; strong similarity to SP|P54411 T-complex
protein 1, epsilon subunit (TCP-1-epsilon) (CCT-epsilon)
(TCP-K36) {Avena sativa}; contains Pfam:PF00118 domain,
TCP-1/cpn60 chaperonin family
Length = 459
Score = 75.4 bits (177), Expect = 3e-14
Identities = 35/60 (58%), Positives = 47/60 (78%)
Frame = +2
Query: 326 MSVIHPAAKMLVELSRAQDIEAGDGTTSVVVIAGALLDSAEKLLQKGIHPTVISDGFQKA 505
M V + AK++VELSR+QD E GDGTT VVV+AGALL+ AE+ L +GIHP I++G++ A
Sbjct: 1 MDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGALLEQAERQLDRGIHPIRIAEGYEMA 60
Score = 38.7 bits (86), Expect = 0.004
Identities = 19/42 (45%), Positives = 30/42 (71%)
Frame = +1
Query: 550 DLNNEDALLKAAATSLNSKVVSQHSTILAPIAVQAIRAVWDL 675
D+NN + L++ T+L+SK+V++ LA IAV+A+ AV DL
Sbjct: 78 DVNNYEPLVQTCMTTLSSKIVNRCKRSLAEIAVKAVLAVADL 119
>At5g56500.1 68418.m07051 chaperonin, putative similar to
SWISS-PROT:P08927- RuBisCO subunit binding-protein beta
subunit, chloroplast precursor (60 kDa chaperonin beta
subunit, CPN-60 beta) [Pisum sativum]; contains
Pfam:PF00118 domain, TCP-1/cpn60 chaperonin family
Length = 597
Score = 48.4 bits (110), Expect = 5e-06
Identities = 25/84 (29%), Positives = 48/84 (57%), Gaps = 4/84 (4%)
Frame = +2
Query: 263 MIQAANGEVTITNDGATILKQMSVIHPA----AKMLVELSRAQDIEAGDGTTSVVVIAGA 430
++++ G I NDG T+ +++ + P AK++ + + + AGDGTT+ VV+A
Sbjct: 90 VLESKYGSPRIVNDGVTVAREVELEDPVENIGAKLVRQAASKTNDLAGDGTTTSVVLAQG 149
Query: 431 LLDSAEKLLQKGIHPTVISDGFQK 502
L+ K++ G +P +I+ G +K
Sbjct: 150 LIAEGVKVVAAGANPVLITRGIEK 173
>At1g26230.1 68414.m03200 chaperonin, putative similar to
SWISS-PROT:P08927- RuBisCO subunit binding-protein beta
subunit, chloroplast precursor (60 kDa chaperonin beta
subunit, CPN-60 beta) [Pisum sativum]; contains
Pfam:PF00118 domain, TCP-1/cpn60 chaperonin family
Length = 611
Score = 47.6 bits (108), Expect = 8e-06
Identities = 25/84 (29%), Positives = 46/84 (54%), Gaps = 4/84 (4%)
Frame = +2
Query: 263 MIQAANGEVTITNDGATILKQMSVIHPAAKMLVELSRAQDIE----AGDGTTSVVVIAGA 430
++Q G I NDG T+LK++ + P + V+L R + AGDG+T+ +++A
Sbjct: 78 VLQNKYGPPRIVNDGETVLKEIELEDPLENVGVKLVRQAGAKTNDLAGDGSTTSIILAHG 137
Query: 431 LLDSAEKLLQKGIHPTVISDGFQK 502
L+ K++ G +P ++ G +K
Sbjct: 138 LITEGIKVISAGTNPIQVARGIEK 161
>At3g13470.1 68416.m01695 chaperonin, putative similar
SWISS-PROT:P21240- RuBisCO subunit binding-protein beta
subunit, chloroplast precursor (60 kDa chaperonin beta
subunit, CPN-60 beta) [Arabidopsis thaliana]; contains
Pfam:PF00118 domain, TCP-1/cpn60 chaperonin family
Length = 596
Score = 47.2 bits (107), Expect = 1e-05
Identities = 26/95 (27%), Positives = 50/95 (52%), Gaps = 4/95 (4%)
Frame = +2
Query: 263 MIQAANGEVTITNDGATILKQMSVIHPA----AKMLVELSRAQDIEAGDGTTSVVVIAGA 430
++++ G I NDG T+ +++ + P AK++ + + + AGDGTT+ VV+A
Sbjct: 90 VLESKYGSPRIVNDGVTVAREVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQG 149
Query: 431 LLDSAEKLLQKGIHPTVISDGFQKALNWLYRWSKI 535
+ K++ G +P +I+ G +K L K+
Sbjct: 150 FIAEGVKVVAAGANPVLITRGIEKTAKALVNELKL 184
>At1g55490.2 68414.m06348 RuBisCO subunit binding-protein beta
subunit, chloroplast / 60 kDa chaperonin beta subunit /
CPN-60 beta identical to SWISS-PROT:P21240- RuBisCO
subunit binding-protein beta subunit, chloroplast
precursor (60 kDa chaperonin beta subunit, CPN-60 beta)
[Arabidopsis thaliana]
Length = 600
Score = 46.8 bits (106), Expect = 1e-05
Identities = 24/84 (28%), Positives = 47/84 (55%), Gaps = 4/84 (4%)
Frame = +2
Query: 263 MIQAANGEVTITNDGATILKQMSVIHPA----AKMLVELSRAQDIEAGDGTTSVVVIAGA 430
++++ G I NDG T+ +++ + P AK++ + + + AGDGTT+ VV+A
Sbjct: 94 VLESKYGSPRIVNDGVTVAREVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQG 153
Query: 431 LLDSAEKLLQKGIHPTVISDGFQK 502
+ K++ G +P +I+ G +K
Sbjct: 154 FIAEGVKVVAAGANPVLITRGIEK 177
>At1g55490.1 68414.m06347 RuBisCO subunit binding-protein beta
subunit, chloroplast / 60 kDa chaperonin beta subunit /
CPN-60 beta identical to SWISS-PROT:P21240- RuBisCO
subunit binding-protein beta subunit, chloroplast
precursor (60 kDa chaperonin beta subunit, CPN-60 beta)
[Arabidopsis thaliana]
Length = 600
Score = 46.8 bits (106), Expect = 1e-05
Identities = 24/84 (28%), Positives = 47/84 (55%), Gaps = 4/84 (4%)
Frame = +2
Query: 263 MIQAANGEVTITNDGATILKQMSVIHPA----AKMLVELSRAQDIEAGDGTTSVVVIAGA 430
++++ G I NDG T+ +++ + P AK++ + + + AGDGTT+ VV+A
Sbjct: 94 VLESKYGSPRIVNDGVTVAREVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQG 153
Query: 431 LLDSAEKLLQKGIHPTVISDGFQK 502
+ K++ G +P +I+ G +K
Sbjct: 154 FIAEGVKVVAAGANPVLITRGIEK 177
>At5g18820.1 68418.m02236 chaperonin, putative similar to
SWISS-PROT:P08926- RuBisCO subunit binding-protein alpha
subunit, chloroplast precursor (60 kDa chaperonin alpha
subunit, CPN-60 alpha)[Pisum sativum]; contains
Pfam:PF00118 domain, TCP-1/cpn60 chaperonin family
Length = 575
Score = 41.9 bits (94), Expect = 4e-04
Identities = 21/91 (23%), Positives = 46/91 (50%), Gaps = 4/91 (4%)
Frame = +2
Query: 263 MIQAANGEVTITNDGATILKQM----SVIHPAAKMLVELSRAQDIEAGDGTTSVVVIAGA 430
++ A + + NDG TI K + ++ + A ++ E++ + AGDGTT+ +++A
Sbjct: 70 VVLAEKDTIKVINDGVTIAKSIELPDTIENAGATLIQEVAIKMNESAGDGTTTAIILARE 129
Query: 431 LLDSAEKLLQKGIHPTVISDGFQKALNWLYR 523
++ + + G + + +G K + L R
Sbjct: 130 MIKAGSLAIAFGANAVSVKNGMNKTVKELVR 160
>At3g13860.1 68416.m01751 chaperonin, putative similar to
SWISS-PROT:P29197- chaperonin CPN60, mitochondrial
precursor (HSP60) [Arabidopsis thaliana] ; contains
Pfam:PF00118 domain, TCP-1/cpn60 chaperonin family
Length = 572
Score = 39.1 bits (87), Expect = 0.003
Identities = 25/86 (29%), Positives = 45/86 (52%), Gaps = 4/86 (4%)
Frame = +2
Query: 263 MIQAANGEVTITNDGATILKQMSVIHPA----AKMLVELSRAQDIEAGDGTTSVVVIAGA 430
+I+++ G IT DG T+ K +S A A+++ +++ A + AGDGTT V+ A
Sbjct: 69 IIESSYGGPKITKDGVTVAKSISFQAKAKNIGAELVKQVASATNKVAGDGTTCATVLTQA 128
Query: 431 LLDSAEKLLQKGIHPTVISDGFQKAL 508
+L K + G++ + G A+
Sbjct: 129 ILIEGCKSVAAGVNVMDLRVGINMAI 154
>At2g33210.1 68415.m04069 chaperonin, putative similar to
SWISS-PROT:Q05046- chaperonin CPN60-2, mitochondrial
precursor (HSP60-2) [Cucurbita maxima]; contains
Pfam:PF00118 domain, TCP-1/cpn60 chaperonin family
Length = 585
Score = 35.9 bits (79), Expect = 0.026
Identities = 21/87 (24%), Positives = 44/87 (50%), Gaps = 4/87 (4%)
Frame = +2
Query: 263 MIQAANGEVTITNDGATILKQMS----VIHPAAKMLVELSRAQDIEAGDGTTSVVVIAGA 430
+I+ + G +T DG T+ K + + + A ++ +++ A + AGDGTT V+ A
Sbjct: 70 IIEQSWGAPKVTKDGVTVAKSIEFKDRIKNVGASLVKQVANATNDVAGDGTTCATVLTRA 129
Query: 431 LLDSAEKLLQKGIHPTVISDGFQKALN 511
+ K + G++ + G + A++
Sbjct: 130 IFTEGCKSVAAGMNAMDLRRGIKLAVD 156
>At2g28000.1 68415.m03393 RuBisCO subunit binding-protein alpha
subunit, chloroplast / 60 kDa chaperonin alpha subunit /
CPN-60 alpha identical to SWISS-PROT:P21238- RuBisCO
subunit binding-protein alpha subunit, chloroplast
precursor (60 kDa chaperonin alpha subunit, CPN-60
alpha) [Arabidopsis thaliana]
Length = 586
Score = 35.9 bits (79), Expect = 0.026
Identities = 20/83 (24%), Positives = 40/83 (48%), Gaps = 4/83 (4%)
Frame = +2
Query: 281 GEVTITNDGATILKQM----SVIHPAAKMLVELSRAQDIEAGDGTTSVVVIAGALLDSAE 448
G + NDG TI + + ++ + A ++ E++ + AGDGTT+ ++A ++
Sbjct: 89 GSPKVVNDGVTIARAIELPNAMENAGAALIREVASKTNDSAGDGTTTASILAREIIKHGL 148
Query: 449 KLLQKGIHPTVISDGFQKALNWL 517
+ G +P + G K + L
Sbjct: 149 LSVTSGANPVSLKRGIDKTVQGL 171
>At3g23990.1 68416.m03013 chaperonin (CPN60) (HSP60) identical to
SWISS-PROT:P29197- chaperonin CPN60, mitochondrial
precursor (HSP60) [Arabidopsis thaliana]
Length = 577
Score = 35.5 bits (78), Expect = 0.034
Identities = 21/87 (24%), Positives = 43/87 (49%), Gaps = 4/87 (4%)
Frame = +2
Query: 263 MIQAANGEVTITNDGATILKQMS----VIHPAAKMLVELSRAQDIEAGDGTTSVVVIAGA 430
+I+ + G +T DG T+ K + + + A ++ +++ A + AGDGTT V+ A
Sbjct: 69 VIEQSWGAPKVTKDGVTVAKSIEFKDKIKNVGASLVKQVANATNDVAGDGTTCATVLTRA 128
Query: 431 LLDSAEKLLQKGIHPTVISDGFQKALN 511
+ K + G++ + G A++
Sbjct: 129 IFAEGCKSVAAGMNAMDLRRGISMAVD 155
>At1g67760.1 68414.m07732 T-complex protein 1 epsilon subunit,
putative / TCP-1-epsilon, putative / chaperonin,
putative similar to chaperonin containing TCP-1 (CCT)
epsilon subunit [Tetrahymena pyriformis] GI:15824416,
SP|P80316 T-complex protein 1, epsilon subunit
(TCP-1-epsilon) (CCT-epsilon) {Mus musculus}
Length = 142
Score = 35.1 bits (77), Expect = 0.045
Identities = 16/32 (50%), Positives = 23/32 (71%)
Frame = +3
Query: 159 KDKSKPTDIRLSNINAAKAVADAIRTSLGPRG 254
K + K D + +NI+A KAVA +R+SLGP+G
Sbjct: 21 KTRLKGIDAQKANISAGKAVARILRSSLGPKG 52
>At1g13320.1 68414.m01546 serine/threonine protein phosphatase 2A
(PP2A) 65 kDa regulatory subunit, putative similar to
protein phosphatase 2A 65 kDa regulatory subunit
GI:683502 from [Arabidopsis thaliana]
Length = 587
Score = 28.7 bits (61), Expect = 3.9
Identities = 17/45 (37%), Positives = 24/45 (53%)
Frame = -1
Query: 426 PAITTTDVVPSPASIS*ARDNSTNIFAAG*ITLICFKIVAPSLVI 292
P T TD+VP+ A + + I AAG +T C +I+ P L I
Sbjct: 274 PEPTRTDLVPAYARLLCDNEAEVRIAAAGKVTKFC-RILNPELAI 317
>At5g49770.1 68418.m06164 leucine-rich repeat transmembrane protein
kinase, putative
Length = 946
Score = 27.5 bits (58), Expect = 9.0
Identities = 11/31 (35%), Positives = 15/31 (48%)
Frame = +3
Query: 579 GSCNITKFQSSFTTLNYFGTHCSASYSSSMG 671
G CN + S+F+TL G HC + G
Sbjct: 407 GYCNAVQPNSTFSTLTKCGNHCGKGKEPNQG 437
>At4g15380.1 68417.m02350 cytochrome P450 family protein similar to
CYTOCHROME P450 93A3 (P450 CP5) (SP:O81973) [Glycine
max]
Length = 517
Score = 27.5 bits (58), Expect = 9.0
Identities = 13/30 (43%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Frame = -3
Query: 322 FQNCCSIISYCNFSIGCLNHLI-HPRGPKL 236
FQNC I C FS C +H P+ P+L
Sbjct: 9 FQNCFIFILLCLFSRLCYSHFFKKPKDPRL 38
>At2g43040.1 68415.m05341 calmodulin-binding protein similar to
pollen-specific calmodulin-binding protein MPCBP
GI:10086260 from [Zea mays]; contains Pfam profile
PF00515: TPR Domain
Length = 704
Score = 27.5 bits (58), Expect = 9.0
Identities = 17/65 (26%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Frame = +2
Query: 323 QMSVIHPAAKMLVELS--RAQDIEAGDGTTSVVVIAGALLDSAEKLLQKGIHPTVISDGF 496
Q SV AA +++E +A+ ++ T ++LDS EK+ Q+GI + +
Sbjct: 113 QQSVSQHAANLVLEAIYLKAKSLQKLGRITEAAHECKSVLDSVEKIFQQGIPDAQVDNKL 172
Query: 497 QKALN 511
Q+ ++
Sbjct: 173 QETVS 177
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,034,571
Number of Sequences: 28952
Number of extensions: 266575
Number of successful extensions: 688
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 663
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 687
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1496852856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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