Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021327
         (667 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ439353-12|CAD27934.1|  160|Anopheles gambiae putative MLC1 pro...    45   2e-06
AJ439398-8|CAD28131.1| 1283|Anopheles gambiae putative different...    25   1.6  
AJ535205-1|CAD59405.1| 1201|Anopheles gambiae SMC3 protein protein.    23   6.5  
AB090824-2|BAC57924.1| 1248|Anopheles gambiae reverse transcript...    23   6.5  
AY753539-1|AAV28542.1| 3318|Anopheles gambiae SGS2 protein.            23   8.7  
AF002238-1|AAB97731.1|  327|Anopheles gambiae ribosomal protein ...    23   8.7  

>AJ439353-12|CAD27934.1|  160|Anopheles gambiae putative MLC1
           protein protein.
          Length = 160

 Score = 45.2 bits (102), Expect = 2e-06
 Identities = 21/58 (36%), Positives = 36/58 (62%), Gaps = 2/58 (3%)
 Frame = +3

Query: 333 EAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREA--DIDGDGQVNYEEFV 500
           E  +++DK+ +G +  AEL H +T LGE+L D E+D ++++     D DG + Y  F+
Sbjct: 89  ECLKLYDKNEDGTMLLAELTHSLTALGERLDDVELDNVMKDCMDPEDDDGNIPYAPFL 146



 Score = 37.9 bits (84), Expect = 3e-04
 Identities = 16/45 (35%), Positives = 28/45 (62%)
 Frame = +2

Query: 74  MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPT 208
           MA+ L + +I + +  FS++D +G G +   +LG  +R+L  NPT
Sbjct: 1   MANDLKDVEIEKAQFVFSVYDWEGSGQMDAMDLGNALRALNLNPT 45



 Score = 33.1 bits (72), Expect = 0.008
 Identities = 14/44 (31%), Positives = 26/44 (59%)
 Frame = +2

Query: 107 EFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINE 238
           +F E   L+DK+ DGT+   EL   + +LG+   + EL +++ +
Sbjct: 86  DFLECLKLYDKNEDGTMLLAELTHSLTALGERLDDVELDNVMKD 129



 Score = 26.2 bits (55), Expect = 0.93
 Identities = 15/54 (27%), Positives = 29/54 (53%)
 Frame = +3

Query: 339 FRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFV 500
           F V+D +G+G + A +L + +  L    T E + +M       G+ ++ +EEF+
Sbjct: 17  FSVYDWEGSGQMDAMDLGNALRALNLNPTIELIGKM-GGTQKRGEKKIKFEEFL 69


>AJ439398-8|CAD28131.1| 1283|Anopheles gambiae putative
           differentiation regulator protein.
          Length = 1283

 Score = 25.4 bits (53), Expect = 1.6
 Identities = 18/72 (25%), Positives = 30/72 (41%)
 Frame = -3

Query: 551 SAFYTHTSRRLTSTYHGDELFVIDLAVAVDIGLANHLVDLLVSEFLSEVGHDVAQLGRGD 372
           +A Y+H+     S+YH     +  L ++    LAN   +L ++  +    H    L  G 
Sbjct: 640 AAAYSHSIASTMSSYHSSMAHIGGLNLSHTAALAN-AQNLSLAGHIPPPAHGSLNLSAGG 698

Query: 371 EAVAVLVEDAEG 336
             VAV+     G
Sbjct: 699 SPVAVVSSSPTG 710


>AJ535205-1|CAD59405.1| 1201|Anopheles gambiae SMC3 protein protein.
          Length = 1201

 Score = 23.4 bits (48), Expect = 6.5
 Identities = 12/43 (27%), Positives = 21/43 (48%)
 Frame = +3

Query: 351  DKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQ 479
            D++GN      E     T +G +++  +VD  +RE +    GQ
Sbjct: 1061 DQEGNDMEREVETSDEFTGIGIRVSFTQVDAEMREMNQLSGGQ 1103


>AB090824-2|BAC57924.1| 1248|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1248

 Score = 23.4 bits (48), Expect = 6.5
 Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
 Frame = -1

Query: 340 KASRISXRYPCPSSCAPSLSRTRESLSCRSV--RVYFIDHV 224
           + SRI   +  PS C P L+    S +C  +  R  + DHV
Sbjct: 168 RPSRIDVAFASPSICRPDLA--ANSATCWRILSRYSYSDHV 206


>AY753539-1|AAV28542.1| 3318|Anopheles gambiae SGS2 protein.
          Length = 3318

 Score = 23.0 bits (47), Expect = 8.7
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = +3

Query: 537  CVKSREFKYTFCFMTHNISIVLDLHFSS 620
            C +     Y F   T NIS + + H+SS
Sbjct: 3093 CYEQHGLSYVFPHNTSNISGITEDHYSS 3120


>AF002238-1|AAB97731.1|  327|Anopheles gambiae ribosomal protein L5
           protein.
          Length = 327

 Score = 23.0 bits (47), Expect = 8.7
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = +3

Query: 99  RSPSLRRHSHCSTKTAMAPSRPKS 170
           RSP  RR S  +  T+   SRP S
Sbjct: 272 RSPPARRRSRSTRPTSWPRSRPTS 295


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 586,391
Number of Sequences: 2352
Number of extensions: 11410
Number of successful extensions: 26
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 66486645
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)