Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021324
         (669 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22A12.09c |sap114||splicing factor Sap114|Schizosaccharomyce...    57   3e-09
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr...    26   4.3  
SPAC11D3.17 |||zinc finger protein|Schizosaccharomyces pombe|chr...    25   7.5  
SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1 |Schizosacch...    25   7.5  
SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces po...    25   9.9  
SPBC1703.04 |mlh1||MutL family protein Mlh1 |Schizosaccharomyces...    25   9.9  
SPBC16D10.02 |trm11||tRNA |Schizosaccharomyces pombe|chr 2|||Manual    25   9.9  

>SPAC22A12.09c |sap114||splicing factor Sap114|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 481

 Score = 56.8 bits (131), Expect = 3e-09
 Identities = 25/51 (49%), Positives = 36/51 (70%), Gaps = 1/51 (1%)
 Frame = +1

Query: 280 LRNIIDKLAQFVARNGPEFEKMTKNKQKNNPKFSFLYGGE-YFNYYQYKVT 429
           +R IIDK A +VARNGP FE+  +  ++ N KF+FL+  + Y  YYQ+K+T
Sbjct: 41  IREIIDKSASYVARNGPAFEEKIRQNEQANTKFAFLHANDPYHPYYQHKLT 91


>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1517

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 17/53 (32%), Positives = 24/53 (45%)
 Frame = -1

Query: 654 SISWWVLRKGRRGRVDCKPTAEVQVPPPSRPLDPAEQASRWPVGALHIAVLCH 496
           ++ WW  +    G    K  AE+  PP   P     + SR P+G LH  V+ H
Sbjct: 296 NVEWW--KTNEFGGFHLKKKAEM--PPLQVPDLAYIEFSRSPIGELHGVVISH 344


>SPAC11D3.17 |||zinc finger protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 585

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 15/53 (28%), Positives = 27/53 (50%), Gaps = 4/53 (7%)
 Frame = -3

Query: 376 ILGYFFVCSWSSSQIPVHFLRRIALICRLCCG-DLDLAVA---WHSIFIVYEV 230
           +  +    S++S  +   FLR + +I  LC G + D ++A   W S F V ++
Sbjct: 158 VFPFIHQASFNSENVAASFLRSLVVIACLCTGIESDFSMALLFWDSGFHVLQL 210


>SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1327

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = +3

Query: 6   NSARTRFESSNKILKPTIYKWPMCFNHIQQYINRIK 113
           NSA      + K +  T Y + +CF+ +Q + N I+
Sbjct: 340 NSANLAIHYNAKRISETGYSFDLCFSTLQTFENNIQ 375


>SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 743

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 14/47 (29%), Positives = 22/47 (46%)
 Frame = -2

Query: 392 PYRKLNFGLFFCLFLVIFSNSGPFLATNCANLSIMLRRS*SCGGVAF 252
           P   +  G    LF+ I  ++  F +TN   +S +L+   S  GV F
Sbjct: 110 PVLSIIVGWLIFLFITIGISASDFFSTNLVTISWLLQLPDSVVGVTF 156


>SPBC1703.04 |mlh1||MutL family protein Mlh1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 684

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = -2

Query: 401 YSPPYRKLNFGLFFCLFLVIFSNSGPFLATNCANLS 294
           Y   Y KL++ LF+ + L  F N G F+     ++S
Sbjct: 495 YVVDYGKLSYHLFYQICLTEFGNYGEFVLETPLSIS 530


>SPBC16D10.02 |trm11||tRNA |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 452

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -1

Query: 426 HFVLIVVEVLAAIQETKFWVI 364
           HF L  +E LA I+  +FW+I
Sbjct: 14  HFHLPELETLAKIENVEFWLI 34


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,533,929
Number of Sequences: 5004
Number of extensions: 50259
Number of successful extensions: 117
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)