Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021324
(669 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_1156 - 28069663-28070393,28070966-28071231,28072023-28072909 72 5e-13
09_02_0221 + 5962606-5963197,5963711-5963837,5963994-5964100,596... 56 3e-08
02_02_0240 + 8196140-8198248,8198381-8198650 52 5e-07
06_03_0097 - 16607936-16608712,16610114-16610320,16611220-166113... 44 8e-05
01_06_0381 + 28878811-28879120,28880189-28880331,28880753-288815... 38 0.007
02_01_0598 + 4440018-4440070,4440627-4440693,4440794-4440926,444... 37 0.013
10_08_0914 + 21535519-21535797,21535961-21536339,21536425-215365... 32 0.36
01_06_0868 - 32587618-32587875,32588239-32588318,32588518-325885... 32 0.48
01_07_0090 - 41003888-41004716,41005142-41005559,41007010-41007193 31 1.1
02_05_0998 + 33391021-33391266,33391354-33391502,33391600-333916... 30 1.5
04_03_0383 + 15179587-15180162,15180334-15181149,15181548-15182789 29 2.5
03_01_0538 - 4038954-4039444,4040172-4040248,4040838-4040911,404... 29 2.5
01_06_1300 + 36116511-36116636,36116672-36116734,36117782-361178... 29 2.5
01_06_1088 - 34439311-34439987,34440080-34440136,34442790-344429... 29 4.4
01_03_0110 + 12633492-12633751,12634616-12634715,12635990-126360... 29 4.4
05_05_0013 - 21509307-21509493,21509762-21510123 28 5.9
03_05_0710 + 27038709-27038865,27039205-27039346,27039383-270395... 28 5.9
02_02_0656 - 12683240-12683409,12684309-12684444 28 5.9
04_04_1696 + 35448667-35449641,35449726-35450562,35450667-354510... 28 7.7
01_06_0922 - 33022709-33023545 28 7.7
01_01_1217 + 9830435-9830770 28 7.7
>06_03_1156 - 28069663-28070393,28070966-28071231,28072023-28072909
Length = 627
Score = 71.7 bits (168), Expect = 5e-13
Identities = 27/57 (47%), Positives = 44/57 (77%)
Frame = +1
Query: 256 ATPPQDQDLRNIIDKLAQFVARNGPEFEKMTKNKQKNNPKFSFLYGGEYFNYYQYKV 426
A PP D +L+ IDK+ +++A+NGPEFE + ++KQ +NP ++F++GGE YY+YK+
Sbjct: 100 APPPSDPELQKRIDKVVEYIAKNGPEFEVVIRDKQHDNPDYAFIFGGEGHAYYRYKL 156
>09_02_0221 +
5962606-5963197,5963711-5963837,5963994-5964100,
5964185-5964328,5964700-5964822,5964921-5965103,
5965540-5965718,5965797-5965823
Length = 493
Score = 55.6 bits (128), Expect = 3e-08
Identities = 22/65 (33%), Positives = 40/65 (61%), Gaps = 2/65 (3%)
Frame = +1
Query: 259 TPPQDQDLRNIIDKLAQFVARNGPEFEKMTKNKQKNNPKFSFLYGGEY--FNYYQYKVTT 432
+PP D ++ + DKLA FVA+NG +FE +T+ + + F FL+ + YY++++
Sbjct: 200 SPPNDMTVKQVADKLANFVAKNGRQFENVTRQRNPGDTPFKFLFDKNCSDYKYYEFRLAE 259
Query: 433 EQAIL 447
E+ +L
Sbjct: 260 EEMLL 264
>02_02_0240 + 8196140-8198248,8198381-8198650
Length = 792
Score = 51.6 bits (118), Expect = 5e-07
Identities = 24/52 (46%), Positives = 35/52 (67%), Gaps = 1/52 (1%)
Frame = +1
Query: 277 DLRNIIDKLAQFVARNGPEFEKMTKNKQKNNPKFSFLYGGE-YFNYYQYKVT 429
D+R II+K A FV++NGPEFE+ + N KF+FL + Y YYQ++V+
Sbjct: 54 DIRVIIEKTATFVSKNGPEFERRIISHNAGNAKFNFLQPSDPYHAYYQHRVS 105
Score = 33.9 bits (74), Expect = 0.12
Identities = 15/34 (44%), Positives = 20/34 (58%)
Frame = +1
Query: 286 NIIDKLAQFVARNGPEFEKMTKNKQKNNPKFSFL 387
+II AQFVARNG F ++ NP+F F+
Sbjct: 187 DIIKLTAQFVARNGKSFLTSLAQRESTNPQFHFI 220
>06_03_0097 -
16607936-16608712,16610114-16610320,16611220-16611336,
16611409-16611690,16611811-16612294,16612791-16612929,
16613138-16613243,16613396-16613562,16613632-16613707,
16614173-16614321,16614813-16614874,16615232-16615335,
16616856-16616950,16617046-16617136,16617785-16617922
Length = 997
Score = 44.4 bits (100), Expect = 8e-05
Identities = 22/54 (40%), Positives = 30/54 (55%)
Frame = +1
Query: 265 PQDQDLRNIIDKLAQFVARNGPEFEKMTKNKQKNNPKFSFLYGGEYFNYYQYKV 426
P+D LR +I+ A VAR G E K K K N +F+FL G+ +YY K+
Sbjct: 413 PEDTSLRLLIEGCAAMVARCGKHIEDFYKEKSKTNTQFNFLNEGDGCSYYARKL 466
>01_06_0381 +
28878811-28879120,28880189-28880331,28880753-28881532,
28882568-28883968
Length = 877
Score = 37.9 bits (84), Expect = 0.007
Identities = 21/65 (32%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Frame = +1
Query: 253 NATPPQDQDLRNIIDKLAQFVARNGPEFEKMTKNKQKNNPKFSFLYGGEYF-NYYQYKVT 429
N PP ++ + II + A FV+ +G + E + + KQ +NP F FL + +Y++Y V
Sbjct: 149 NKLPPSEK-VHQIIARTALFVSEHGGQSEIVLRVKQGSNPTFGFLMPDHHLHSYFRYLVD 207
Query: 430 TEQAI 444
Q +
Sbjct: 208 HPQLL 212
Score = 35.1 bits (77), Expect = 0.051
Identities = 15/52 (28%), Positives = 27/52 (51%)
Frame = +1
Query: 280 LRNIIDKLAQFVARNGPEFEKMTKNKQKNNPKFSFLYGGEYFNYYQYKVTTE 435
L+ ++K+ +F+ RNG EFE + + +F FL ++ Y K+ E
Sbjct: 357 LKRTMEKIVEFIIRNGKEFEGKLIEQDRTTGRFPFLLPSNPYHPYYLKLLEE 408
>02_01_0598 +
4440018-4440070,4440627-4440693,4440794-4440926,
4441075-4441120,4442470-4442521,4442601-4442753,
4443338-4443457,4443549-4443714,4443822-4443934,
4444049-4444120,4444992-4445213,4445270-4445317,
4445639-4445697,4445809-4445887,4445982-4446119,
4446327-4446551,4446643-4447430,4447548-4447723,
4447911-4448169,4448646-4448707,4451055-4451212,
4451618-4451743,4452197-4452260,4452386-4452494,
4452607-4452760,4453055-4453178,4453257-4453333,
4453442-4453494,4453673-4453727,4453833-4454021
Length = 1379
Score = 37.1 bits (82), Expect = 0.013
Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Frame = +1
Query: 262 PPQDQDLRNIIDKLAQFVARNGPEFEKMTKNKQKNNPKFSFLYG--GEYFNYYQYKV 426
PP D +R++ID +A V G FE+ + + N FSFL+ + YY +++
Sbjct: 338 PPDDAHVRHVIDTMALHVLDGGCAFEQAVMERGRGNSLFSFLFDLKSKEHTYYVWRL 394
>10_08_0914 +
21535519-21535797,21535961-21536339,21536425-21536568,
21536681-21536730,21536820-21536877,21536979-21537208
Length = 379
Score = 32.3 bits (70), Expect = 0.36
Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Frame = -1
Query: 612 VDCKPTAEVQVPPPSRPLDPAEQASR-WPVGALHIAVLCHIG 490
+D + A +PPP PL+P E SR W V A I+ + G
Sbjct: 20 MDEEEAAAAAIPPPQTPLEPMEYLSRSWSVSASEISKILFNG 61
>01_06_0868 -
32587618-32587875,32588239-32588318,32588518-32588583,
32589896-32590523
Length = 343
Score = 31.9 bits (69), Expect = 0.48
Identities = 21/56 (37%), Positives = 27/56 (48%), Gaps = 4/56 (7%)
Frame = +2
Query: 455 RPVGRRHPLPPGPIWHRTAICNAPTGQRDACSAGSSGLDGGGTC----TSAVGLQS 610
+P GR PPGP W R+ + P+ AC+ G+ G G C AVGL S
Sbjct: 94 QPWGRTWARPPGPTWPRSDLGGFPS-SGCACAQGACGGARGCPCADPEAEAVGLGS 148
>01_07_0090 - 41003888-41004716,41005142-41005559,41007010-41007193
Length = 476
Score = 30.7 bits (66), Expect = 1.1
Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
Frame = +2
Query: 476 PLPPGPIWHRTAICNAPTGQRDACSAGSSGLDG--GGTCTSAVGLQSTLPRLPFLSTH 643
P PP P AI +A + A G++ G GG A+G+ L RLP + H
Sbjct: 320 PPPPPPAGSAAAIMSATALLQKAAELGATTSTGCYGGVAFPAMGIAGGLDRLPAIGHH 377
>02_05_0998 +
33391021-33391266,33391354-33391502,33391600-33391681,
33391808-33392223,33393659-33393854,33393932-33394074,
33394153-33394327,33394450-33394503,33394701-33394877,
33395832-33395944,33396083-33396265,33396570-33396632,
33396742-33396894,33396922-33396994,33397076-33397206,
33397285-33397420,33397504-33397581,33398146-33398262,
33398473-33398535,33398619-33398720
Length = 949
Score = 30.3 bits (65), Expect = 1.5
Identities = 11/36 (30%), Positives = 23/36 (63%)
Frame = +1
Query: 271 DQDLRNIIDKLAQFVARNGPEFEKMTKNKQKNNPKF 378
D+ L + +L +F+ R+G +FE + + +K +P+F
Sbjct: 731 DESLYELAGELVRFLLRSGRDFENASTDSEKLSPRF 766
>04_03_0383 + 15179587-15180162,15180334-15181149,15181548-15182789
Length = 877
Score = 29.5 bits (63), Expect = 2.5
Identities = 13/21 (61%), Positives = 13/21 (61%)
Frame = +2
Query: 521 APTGQRDACSAGSSGLDGGGT 583
APTG D S GSSG G GT
Sbjct: 17 APTGHMDGFSQGSSGYGGSGT 37
>03_01_0538 -
4038954-4039444,4040172-4040248,4040838-4040911,
4041115-4041203,4041481-4041563,4041645-4042233,
4042915-4043101
Length = 529
Score = 29.5 bits (63), Expect = 2.5
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = +2
Query: 530 GQRDACSAGSSGLDGGGTCTSAVGLQSTLPRLPFLS 637
G D C G+ G DG G+C+S V S L +P S
Sbjct: 19 GYGDGCGEGNGGGDGDGSCSSPVA-ASPLVAMPLHS 53
>01_06_1300 +
36116511-36116636,36116672-36116734,36117782-36117833,
36118144-36118224,36118651-36118775,36118831-36118934,
36119487-36119615,36119899-36121054
Length = 611
Score = 29.5 bits (63), Expect = 2.5
Identities = 23/84 (27%), Positives = 36/84 (42%)
Frame = +3
Query: 276 RSPQHNRQISAIRRKKWTGI*EDDQEQTKK*PKI*FPVWRRVLQLLSIQSDDRTSNSKAN 455
R HN IR+ WT E++Q +I W + ++L RT NS N
Sbjct: 182 RERWHNHLNPEIRKDAWTT--EEEQALINA-HRIYGNKWAEIAKVLP----GRTDNSIKN 234
Query: 456 GRWAGGIRSRRGLYGTEQQYVMPQ 527
W +R ++ +Y T V+P+
Sbjct: 235 -HWNSSLRKKQDMYNTSNNMVVPK 257
>01_06_1088 -
34439311-34439987,34440080-34440136,34442790-34442919,
34443499-34443740,34443857-34444008,34444381-34444461,
34444547-34444612,34444692-34444763,34444843-34444984,
34445146-34445645,34446625-34447192,34447248-34447257
Length = 898
Score = 28.7 bits (61), Expect = 4.4
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = -1
Query: 642 WVLRKGRRGRVDCKPTAEVQVPP 574
W LRKGRR + T + Q+PP
Sbjct: 315 WFLRKGRRAYFQLRKTPDSQLPP 337
>01_03_0110 +
12633492-12633751,12634616-12634715,12635990-12636085,
12636670-12636717,12636819-12636914
Length = 199
Score = 28.7 bits (61), Expect = 4.4
Identities = 14/50 (28%), Positives = 22/50 (44%)
Frame = -1
Query: 654 SISWWVLRKGRRGRVDCKPTAEVQVPPPSRPLDPAEQASRWPVGALHIAV 505
S WW+ R+ G+V ++ + P SRP + A W + I V
Sbjct: 43 SSRWWMRRRRGEGKVKISSSSRARAKPMSRPALFSPVAMEWQECSTEIEV 92
>05_05_0013 - 21509307-21509493,21509762-21510123
Length = 182
Score = 28.3 bits (60), Expect = 5.9
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = +3
Query: 429 DRTSNSKANGRWAGGIRSRRGLYGTEQQY 515
D +NS +GR +GG RRG+ TE+++
Sbjct: 92 DDDNNSAGHGRGSGGDERRRGVPWTEEEH 120
>03_05_0710 +
27038709-27038865,27039205-27039346,27039383-27039558,
27039639-27039703,27040000-27040371,27040429-27040504,
27040505-27040571,27040672-27040825,27041122-27041289,
27041392-27041502,27041612-27041722,27041864-27041881,
27041917-27042018,27042587-27042817,27043390-27043464,
27043744-27043815,27044597-27044782,27044868-27045026,
27045251-27045343,27045730-27045801,27046336-27046426,
27046669-27046847,27047252-27047333,27047526-27047636,
27047715-27047821,27048194-27048271,27048357-27048452,
27048627-27048722,27048839-27048856
Length = 1154
Score = 28.3 bits (60), Expect = 5.9
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = -2
Query: 308 CANLSIMLRRS*SCGGVAFHFYRLRGYC 225
CA+ S L CGGV F + +RG C
Sbjct: 14 CASSSFRLDLFLGCGGVVFAVFEMRGRC 41
>02_02_0656 - 12683240-12683409,12684309-12684444
Length = 101
Score = 28.3 bits (60), Expect = 5.9
Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 2/55 (3%)
Frame = -1
Query: 642 WVLRKGRRGRVDCKPTAEVQVPPPSRPLDPA--EQASRWPVGALHIAVLCHIGPG 484
WV + G V PT Q+P + P+ A A W G IA+ +G G
Sbjct: 24 WVFKTDGSGHVPTNPTPYSQIPYLAAPMRAAINPVAPDWREGGAAIAIPTGVGAG 78
>04_04_1696 +
35448667-35449641,35449726-35450562,35450667-35451001,
35451371-35451497,35451594-35451752,35451872-35453053,
35453164-35453424,35453513-35453761
Length = 1374
Score = 27.9 bits (59), Expect = 7.7
Identities = 14/32 (43%), Positives = 19/32 (59%)
Frame = -1
Query: 273 ILRWRGIPFLSFTRLLLDVA*CLKLIDYYYFN 178
I R G P LSF++LL D LK DY++ +
Sbjct: 257 IARCSGAPLLSFSQLLHDCPNHLKHCDYFHID 288
>01_06_0922 - 33022709-33023545
Length = 278
Score = 27.9 bits (59), Expect = 7.7
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = -1
Query: 606 CKPTAEVQVPPPSRPLDPAEQ 544
CKP AE + PPP PL E+
Sbjct: 23 CKPPAEARDPPPPPPLPEEEK 43
>01_01_1217 + 9830435-9830770
Length = 111
Score = 27.9 bits (59), Expect = 7.7
Identities = 13/35 (37%), Positives = 15/35 (42%)
Frame = +2
Query: 476 PLPPGPIWHRTAICNAPTGQRDACSAGSSGLDGGG 580
PL P P WH +C T R G S + G G
Sbjct: 20 PLLPTPPWHSGVVCRTTTPCRVPSVHGGSCVGGSG 54
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,224,831
Number of Sequences: 37544
Number of extensions: 361933
Number of successful extensions: 1395
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 1348
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1395
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1691314196
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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