Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021324
         (669 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_49263| Best HMM Match : Surp (HMM E-Value=1e-28)                    56   3e-08
SB_53239| Best HMM Match : No HMM Matches (HMM E-Value=.)              47   1e-05
SB_41910| Best HMM Match : No HMM Matches (HMM E-Value=.)              38   0.010
SB_1930| Best HMM Match : zf-CCHC (HMM E-Value=0.53)                   29   2.6  
SB_40376| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.0  
SB_25516| Best HMM Match : AAA_2 (HMM E-Value=0)                       28   7.9  
SB_9866| Best HMM Match : TP2 (HMM E-Value=0.27)                       28   7.9  

>SB_49263| Best HMM Match : Surp (HMM E-Value=1e-28)
          Length = 641

 Score = 55.6 bits (128), Expect = 3e-08
 Identities = 29/64 (45%), Positives = 43/64 (67%), Gaps = 4/64 (6%)
 Frame = +1

Query: 253 NATP---PQDQDLRNIIDKLAQFVARNGPEFEKMTKNKQKNNPKFSF-LYGGEYFNYYQY 420
           +ATP   P   DL+ I+DKLA++VA+NGP+FE +   K K +P+F F L   E+  YYQ+
Sbjct: 382 HATPTIIPPPPDLQPIVDKLARYVAKNGPDFESII--KAKGDPRFDFVLPWNEHHAYYQF 439

Query: 421 KVTT 432
           ++ T
Sbjct: 440 RIRT 443



 Score = 41.9 bits (94), Expect = 5e-04
 Identities = 20/53 (37%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
 Frame = +1

Query: 265 PQDQDLRNIIDKLAQFVARNGPEFEKMTKNKQKNNPKFSFLYGGEYFN-YYQY 420
           P    +  II+K A FV++ G + E + K KQ  NP+F FL    + N YY++
Sbjct: 158 PDTAKMNAIIEKTALFVSKQGTQMEILVKAKQAGNPQFDFLNFDNWLNPYYKH 210


>SB_53239| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 520

 Score = 47.2 bits (107), Expect = 1e-05
 Identities = 18/53 (33%), Positives = 33/53 (62%)
 Frame = +1

Query: 265 PQDQDLRNIIDKLAQFVARNGPEFEKMTKNKQKNNPKFSFLYGGEYFNYYQYK 423
           P+++ + ++I ++ +FV R GP FE M  N++ NNPK  FL+  +   +  Y+
Sbjct: 352 PKERGVLSMIHRVVEFVVREGPMFEAMIMNREINNPKMRFLFDNQSHEHTYYR 404


>SB_41910| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1486

 Score = 37.5 bits (83), Expect = 0.010
 Identities = 16/34 (47%), Positives = 23/34 (67%), Gaps = 1/34 (2%)
 Frame = +1

Query: 328 PEFEKMTKNKQKNNPKFSFLYGGE-YFNYYQYKV 426
           PEFE   +  + NNPKF+FL  G+ Y+ Y+ +KV
Sbjct: 762 PEFESRIRQNEINNPKFNFLNQGDPYYAYFLHKV 795


>SB_1930| Best HMM Match : zf-CCHC (HMM E-Value=0.53)
          Length = 152

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = +2

Query: 488 GPIWHRTAICNAPTGQRDACSAGSSGLDGGGT 583
           G   H +A C  P     A S  S GL+GGG+
Sbjct: 2   GEFGHLSAFCEKPNRTGAAASTPSKGLEGGGS 33


>SB_40376| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 579

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 14/28 (50%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = -1

Query: 621 RGRVDCKPTAEVQVPPPSRP-LDPAEQA 541
           R  V+  P  E+++ PP  P LDPAEQA
Sbjct: 296 RNAVNPGPNTEIKMLPPYSPFLDPAEQA 323


>SB_25516| Best HMM Match : AAA_2 (HMM E-Value=0)
          Length = 609

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 21/83 (25%), Positives = 30/83 (36%)
 Frame = +2

Query: 341 R*PRTNKKITQNLVSCMAASTSTTINTK*RQNKQF*SKRPVGRRHPLPPGPIWHRTAICN 520
           R P+  K +T+ LVS    +T      +          R      PL    + H T +CN
Sbjct: 12  RTPQGRKNLTKLLVSSALNTTKEATPVRQIHAIAVDGTRRHANASPLSCQLLHHPTGLCN 71

Query: 521 APTGQRDACSAGSSGLDGGGTCT 589
                R + +    G D GG  T
Sbjct: 72  VNGQSRRSLTVSGGGKDKGGNST 94


>SB_9866| Best HMM Match : TP2 (HMM E-Value=0.27)
          Length = 1019

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 11/40 (27%), Positives = 20/40 (50%)
 Frame = +1

Query: 319 RNGPEFEKMTKNKQKNNPKFSFLYGGEYFNYYQYKVTTEQ 438
           ++GP  +    N + NN  F   YGG + +  + ++T  Q
Sbjct: 613 QSGPTNDSKKSNDKNNNASFDMYYGGYHGDRSRNRITLSQ 652


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,447,239
Number of Sequences: 59808
Number of extensions: 393011
Number of successful extensions: 1109
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1032
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1109
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1729817375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)