Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021324
(669 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U09415-1|AAA82164.1| 655|Caenorhabditis elegans Ceprp21 protein. 50 1e-06
AF106576-5|AAC78179.1| 655|Caenorhabditis elegans Yeast prp (sp... 50 1e-06
AC006605-3|AAK85442.1| 933|Caenorhabditis elegans Hypothetical ... 41 0.001
AC006749-1|AAV28322.1| 1372|Caenorhabditis elegans Hypothetical ... 33 0.18
AC084152-8|AAK39317.1| 541|Caenorhabditis elegans Hypothetical ... 28 5.2
AF022982-3|AAB69932.1| 670|Caenorhabditis elegans Hypothetical ... 28 6.9
AF036706-6|AAK39275.2| 481|Caenorhabditis elegans Glutamyl(e)/g... 27 9.1
AF025460-6|AAB70989.1| 130|Caenorhabditis elegans Ribosomal pro... 27 9.1
>U09415-1|AAA82164.1| 655|Caenorhabditis elegans Ceprp21 protein.
Length = 655
Score = 50.4 bits (115), Expect = 1e-06
Identities = 23/51 (45%), Positives = 32/51 (62%), Gaps = 1/51 (1%)
Frame = +1
Query: 277 DLRNIIDKLAQFVARNGPEFEKMTKNKQKNNPKFSFL-YGGEYFNYYQYKV 426
D+R I+DK A+F A+NG +FE + K+ NPKF+FL Y YY+ V
Sbjct: 33 DIRTIVDKTARFAAKNGVDFENKIREKEAKNPKFNFLSITDPYHAYYKKMV 83
Score = 30.3 bits (65), Expect = 1.3
Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Frame = +1
Query: 286 NIIDKLAQFVARNGPEFEKMTKNKQKNNPKFSFLYGGE-YFNYYQYKVTTEQAIL 447
++I +A FVARNG +F ++ N +F FL F Y+ V Q +L
Sbjct: 133 DLIRLVALFVARNGRQFLTQLMTREARNYQFDFLKPAHCNFTYFTKLVDQYQKVL 187
>AF106576-5|AAC78179.1| 655|Caenorhabditis elegans Yeast prp
(splicing factor) relatedprotein 21 protein.
Length = 655
Score = 50.4 bits (115), Expect = 1e-06
Identities = 23/51 (45%), Positives = 32/51 (62%), Gaps = 1/51 (1%)
Frame = +1
Query: 277 DLRNIIDKLAQFVARNGPEFEKMTKNKQKNNPKFSFL-YGGEYFNYYQYKV 426
D+R I+DK A+F A+NG +FE + K+ NPKF+FL Y YY+ V
Sbjct: 33 DIRTIVDKTARFAAKNGVDFENKIREKEAKNPKFNFLSITDPYHAYYKKMV 83
Score = 30.3 bits (65), Expect = 1.3
Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Frame = +1
Query: 286 NIIDKLAQFVARNGPEFEKMTKNKQKNNPKFSFLYGGE-YFNYYQYKVTTEQAIL 447
++I +A FVARNG +F ++ N +F FL F Y+ V Q +L
Sbjct: 133 DLIRLVALFVARNGRQFLTQLMTREARNYQFDFLKPAHCNFTYFTKLVDQYQKVL 187
>AC006605-3|AAK85442.1| 933|Caenorhabditis elegans Hypothetical
protein C07H6.4 protein.
Length = 933
Score = 40.7 bits (91), Expect = 0.001
Identities = 18/56 (32%), Positives = 32/56 (57%), Gaps = 2/56 (3%)
Frame = +1
Query: 265 PQDQDLRNIIDKLAQFVARNGPEFEKMTKNKQKNNPKFSFLYG--GEYFNYYQYKV 426
P D+ L ++D++A +V GP+FE M ++ NP F FL+ YY++++
Sbjct: 359 PPDRKLVRVMDRMAVYVVTEGPQFEAMICAEEFQNPMFQFLWDNTSALHVYYRWRI 414
>AC006749-1|AAV28322.1| 1372|Caenorhabditis elegans Hypothetical
protein Y39D8B.1 protein.
Length = 1372
Score = 33.1 bits (72), Expect = 0.18
Identities = 17/43 (39%), Positives = 23/43 (53%)
Frame = +3
Query: 27 ESSNKILKPTIYKWPMCFNHIQQYINRIKN*NSDNISFRSLFS 155
E+ NK +P KW N I+ +NRIK D FR++FS
Sbjct: 1037 ENKNKEKEPK-KKWQTVINEIKDELNRIKQKKKDQEDFRNVFS 1078
>AC084152-8|AAK39317.1| 541|Caenorhabditis elegans Hypothetical
protein Y102A11A.8 protein.
Length = 541
Score = 28.3 bits (60), Expect = 5.2
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = -1
Query: 666 VVMLSISWWVLRKGRRGRVDCKPTAEVQVPPPSRPLD 556
VV+L+I W + D KP ++PPP+ P D
Sbjct: 402 VVILAIIWLKKNQESTSGKDLKPPPPPRMPPPAAPQD 438
>AF022982-3|AAB69932.1| 670|Caenorhabditis elegans Hypothetical
protein T23B12.6 protein.
Length = 670
Score = 27.9 bits (59), Expect = 6.9
Identities = 11/17 (64%), Positives = 12/17 (70%)
Frame = +2
Query: 218 TSSNNLVNDKNGMPRHR 268
TS+NN N NG PRHR
Sbjct: 156 TSTNNSKNKSNGSPRHR 172
>AF036706-6|AAK39275.2| 481|Caenorhabditis elegans
Glutamyl(e)/glutaminyl(q) trnasynthetase protein 3
protein.
Length = 481
Score = 27.5 bits (58), Expect = 9.1
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = +1
Query: 277 DLRNIIDKLAQFVARNGPEFEKMTKNKQKNNPK 375
DLRNI++ L + N E + KN Q N K
Sbjct: 408 DLRNILNSLLEIEVFNSESLEYLAKNHQLNLAK 440
>AF025460-6|AAB70989.1| 130|Caenorhabditis elegans Ribosomal
protein, small subunitprotein 22 protein.
Length = 130
Score = 27.5 bits (58), Expect = 9.1
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = -3
Query: 460 RPFALELLVLSSLCIDSS*STRRHTGN*ILGYFF 359
R F +L S+ +D + R+H G ILG+FF
Sbjct: 97 RQFGYLILTTSAGIMDHEEARRKHLGGKILGFFF 130
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,400,103
Number of Sequences: 27780
Number of extensions: 295641
Number of successful extensions: 945
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 892
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 944
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1508017654
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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