Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021324
(669 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g31200.3 68417.m04431 SWAP (Suppressor-of-White-APricot)/surp... 72 3e-13
At4g31200.2 68417.m04430 SWAP (Suppressor-of-White-APricot)/surp... 72 3e-13
At4g31200.1 68417.m04429 SWAP (Suppressor-of-White-APricot)/surp... 72 3e-13
At1g14650.1 68414.m01741 SWAP (Suppressor-of-White-APricot)/surp... 53 2e-07
At3g52120.1 68416.m05721 SWAP (Suppressor-of-White-APricot)/surp... 50 1e-06
At1g14640.1 68414.m01740 SWAP (Suppressor-of-White-APricot)/surp... 48 6e-06
At5g23080.1 68418.m02698 SWAP (Suppressor-of-White-APricot)/surp... 46 2e-05
At4g16200.1 68417.m02459 SWAP (Suppressor-of-White-APricot)/surp... 44 1e-04
At5g25060.1 68418.m02970 RNA recognition motif (RRM)-containing ... 40 0.001
At5g10800.1 68418.m01255 RNA recognition motif (RRM)-containing ... 40 0.001
At1g18050.1 68414.m02232 SWAP (Suppressor-of-White-APricot)/surp... 38 0.008
At5g55100.2 68418.m06869 SWAP (Suppressor-of-White-APricot)/surp... 37 0.011
At5g55100.1 68418.m06868 SWAP (Suppressor-of-White-APricot)/surp... 37 0.011
At5g20220.1 68418.m02407 zinc knuckle (CCHC-type) family protein... 34 0.074
At5g06520.1 68418.m00735 SWAP (Suppressor-of-White-APricot)/surp... 30 1.6
At5g03980.1 68418.m00378 GDSL-motif lipase/hydrolase family prot... 29 2.8
At4g22930.1 68417.m03311 dihydroorotase, mitochondrial / DHOase ... 28 4.9
At3g12640.1 68416.m01573 RNA recognition motif (RRM)-containing ... 28 6.5
At1g58150.1 68414.m06595 hypothetical protein 27 8.5
>At4g31200.3 68417.m04431 SWAP (Suppressor-of-White-APricot)/surp
domain-containing protein related to DAN26 [Homo
sapiens] gi|1770394|emb|CAA69591
Length = 650
Score = 72.1 bits (169), Expect = 3e-13
Identities = 28/54 (51%), Positives = 41/54 (75%)
Frame = +1
Query: 262 PPQDQDLRNIIDKLAQFVARNGPEFEKMTKNKQKNNPKFSFLYGGEYFNYYQYK 423
PP D +L+ IDKL ++ +NGPEFE M +++QK+NP ++FL+GGE YY+YK
Sbjct: 120 PPADPELQKRIDKLVEYSVKNGPEFEAMMRDRQKDNPDYAFLFGGEGHGYYRYK 173
>At4g31200.2 68417.m04430 SWAP (Suppressor-of-White-APricot)/surp
domain-containing protein related to DAN26 [Homo
sapiens] gi|1770394|emb|CAA69591
Length = 650
Score = 72.1 bits (169), Expect = 3e-13
Identities = 28/54 (51%), Positives = 41/54 (75%)
Frame = +1
Query: 262 PPQDQDLRNIIDKLAQFVARNGPEFEKMTKNKQKNNPKFSFLYGGEYFNYYQYK 423
PP D +L+ IDKL ++ +NGPEFE M +++QK+NP ++FL+GGE YY+YK
Sbjct: 120 PPADPELQKRIDKLVEYSVKNGPEFEAMMRDRQKDNPDYAFLFGGEGHGYYRYK 173
>At4g31200.1 68417.m04429 SWAP (Suppressor-of-White-APricot)/surp
domain-containing protein related to DAN26 [Homo
sapiens] gi|1770394|emb|CAA69591
Length = 650
Score = 72.1 bits (169), Expect = 3e-13
Identities = 28/54 (51%), Positives = 41/54 (75%)
Frame = +1
Query: 262 PPQDQDLRNIIDKLAQFVARNGPEFEKMTKNKQKNNPKFSFLYGGEYFNYYQYK 423
PP D +L+ IDKL ++ +NGPEFE M +++QK+NP ++FL+GGE YY+YK
Sbjct: 120 PPADPELQKRIDKLVEYSVKNGPEFEAMMRDRQKDNPDYAFLFGGEGHGYYRYK 173
>At1g14650.1 68414.m01741 SWAP (Suppressor-of-White-APricot)/surp
domain-containing protein / ubiquitin family protein
similar to SP|Q15459 Splicing factor 3 subunit 1
(Spliceosome associated protein 114) {Homo sapiens};
contains Pfam profiles PF00240: Ubiquitin family,
PF01805: Surp module
Length = 785
Score = 52.8 bits (121), Expect = 2e-07
Identities = 25/56 (44%), Positives = 37/56 (66%), Gaps = 1/56 (1%)
Frame = +1
Query: 277 DLRNIIDKLAQFVARNGPEFEKMTKNKQKNNPKFSFLYGGE-YFNYYQYKVTTEQA 441
D+R I++K AQFV++NG EFEK + N KF+FL + Y +YQ+K+T +A
Sbjct: 67 DIRTIVEKTAQFVSKNGLEFEKRIIVSNEKNAKFNFLKSSDPYHAFYQHKLTEYRA 122
Score = 38.3 bits (85), Expect = 0.005
Identities = 17/34 (50%), Positives = 22/34 (64%)
Frame = +1
Query: 286 NIIDKLAQFVARNGPEFEKMTKNKQKNNPKFSFL 387
+II AQFVARNG F N++ NNP+F F+
Sbjct: 192 DIIKLTAQFVARNGKSFLTGLSNRENNNPQFHFM 225
>At3g52120.1 68416.m05721 SWAP (Suppressor-of-White-APricot)/surp
domain-containing protein / D111/G-patch
domain-containing protein contains Pfam profiles
PF01585: G-patch domain, PF01805: Surp module
Length = 443
Score = 50.0 bits (114), Expect = 1e-06
Identities = 21/64 (32%), Positives = 37/64 (57%), Gaps = 2/64 (3%)
Frame = +1
Query: 262 PPQDQDLRNIIDKLAQFVARNGPEFEKMTKNKQKNNPKFSFLYGGEY--FNYYQYKVTTE 435
PP D ++ + DKLA FVA++G FE +T+ K + F FL+ + YY +++ E
Sbjct: 133 PPSDPTVKKVADKLASFVAKHGRPFEHITRQKNPGDTPFKFLFDENCADYKYYVFRLAEE 192
Query: 436 QAIL 447
+ ++
Sbjct: 193 EKLI 196
>At1g14640.1 68414.m01740 SWAP (Suppressor-of-White-APricot)/surp
domain-containing protein similar to human splicing
factor GB:CAA59494 GI:899298 from [Homo sapiens];
contains Pfam profile PF01805: Surp module
Length = 735
Score = 48.0 bits (109), Expect = 6e-06
Identities = 22/52 (42%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
Frame = +1
Query: 277 DLRNIIDKLAQFVARNGPEFEKMTKNKQKNNPKFSFLYG-GEYFNYYQYKVT 429
++R I++ AQFV++NG F K ++ NN FSFL Y +Y+YKVT
Sbjct: 66 EIRKIVETTAQFVSQNGLAFGNKVKTEKANNANFSFLKSDNPYHGFYRYKVT 117
Score = 33.9 bits (74), Expect = 0.098
Identities = 15/34 (44%), Positives = 21/34 (61%)
Frame = +1
Query: 286 NIIDKLAQFVARNGPEFEKMTKNKQKNNPKFSFL 387
+II AQFVARNG F + ++ NN +F F+
Sbjct: 183 DIIKHTAQFVARNGQSFLRELMRREVNNSQFQFM 216
>At5g23080.1 68418.m02698 SWAP (Suppressor-of-White-APricot)/surp
domain-containing protein contains Pfam domain PF01805:
Surp module
Length = 930
Score = 46.4 bits (105), Expect = 2e-05
Identities = 21/59 (35%), Positives = 35/59 (59%)
Frame = +1
Query: 262 PPQDQDLRNIIDKLAQFVARNGPEFEKMTKNKQKNNPKFSFLYGGEYFNYYQYKVTTEQ 438
PP D +L+ +I+ A FV+R G +E +++ K ++N F FL G +YY ++ EQ
Sbjct: 396 PPADNNLKLLIEGFATFVSRCGKLYEDLSREKNQSNQLFDFLREGNGHDYYARRLWEEQ 454
>At4g16200.1 68417.m02459 SWAP (Suppressor-of-White-APricot)/surp
domain-containing protein contains Pfam profile: PF01805
surp module
Length = 288
Score = 43.6 bits (98), Expect = 1e-04
Identities = 22/58 (37%), Positives = 32/58 (55%), Gaps = 2/58 (3%)
Frame = +1
Query: 259 TPPQDQDLRNIIDKLAQFVARNGPEFEKMTKNKQKNNPKFSFL--YGGEYFNYYQYKV 426
TPP D R ++DK AQFV++ G EFE + + KF+FL YY++K+
Sbjct: 16 TPPADIGTRTLVDKAAQFVSKKGLEFETKIIDSYPTDAKFNFLRSTADPCHTYYKHKL 73
Score = 29.1 bits (62), Expect = 2.8
Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Frame = +1
Query: 304 AQFVARNGPEFEKMTKNKQKNNPKFSFLYGGEY-FNYYQYKVTTEQAIL 447
AQFVA G +F + P+F F+ +Y F++Y V +L
Sbjct: 208 AQFVAWYGDDFRGFLMERVMTEPQFEFMKATDYRFSFYNEFVVAYSQVL 256
Score = 28.7 bits (61), Expect = 3.7
Identities = 12/37 (32%), Positives = 22/37 (59%)
Frame = +1
Query: 289 IIDKLAQFVARNGPEFEKMTKNKQKNNPKFSFLYGGE 399
I++ + V++ G EFE M K+ ++ +F+FL E
Sbjct: 104 IVETTSCLVSQFGSEFEMMVKDSNTDDARFNFLKSSE 140
>At5g25060.1 68418.m02970 RNA recognition motif (RRM)-containing
protein KIAA0332 - Homo sapiens, EMBL:AB002330
Length = 946
Score = 39.9 bits (89), Expect = 0.001
Identities = 18/56 (32%), Positives = 32/56 (57%), Gaps = 2/56 (3%)
Frame = +1
Query: 265 PQDQDLRNIIDKLAQFVARNGPEFEKMTKNKQKNNPKFSFLY--GGEYFNYYQYKV 426
P+D+ LR++ID LA +V FE+ + + NP F F++ G + YY +++
Sbjct: 321 PEDEHLRHVIDTLALYVLDGECAFEQAIMERGRGNPLFKFMFELGSKEHTYYVWRL 376
>At5g10800.1 68418.m01255 RNA recognition motif (RRM)-containing
protein KIAA0332 gene, Homo sapiens, EMBL:HSAB2330
Length = 947
Score = 39.9 bits (89), Expect = 0.001
Identities = 19/56 (33%), Positives = 32/56 (57%), Gaps = 2/56 (3%)
Frame = +1
Query: 265 PQDQDLRNIIDKLAQFVARNGPEFEKMTKNKQKNNPKFSFLY--GGEYFNYYQYKV 426
P+D+ L+ IID +A V G FE+ + + NP F+FL+ G + YY +++
Sbjct: 328 PEDEHLKQIIDTMALNVLDGGCAFEQAIMERGRGNPLFNFLFELGSKEHTYYVWRL 383
>At1g18050.1 68414.m02232 SWAP (Suppressor-of-White-APricot)/surp
domain-containing protein weak similarity to
spliceosome-associated-protein 114 [Echinococcus
multilocularis] GI:11602721; contains Pfam profile
PF01805: Surp module
Length = 285
Score = 37.5 bits (83), Expect = 0.008
Identities = 19/53 (35%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Frame = +1
Query: 283 RNIIDKLAQFVARNGPEFEKMTKNKQKNNPKFSFLYGGE-YFNYYQYKVTTEQ 438
R D A+ V GPE E+ NPK+SF + + Y YYQ K+ Q
Sbjct: 151 RYYADSSARLVFMEGPEMERKMMTSYAGNPKYSFFWSSDRYHAYYQKKLAGYQ 203
>At5g55100.2 68418.m06869 SWAP (Suppressor-of-White-APricot)/surp
domain-containing protein contains Pfam domain PF01805:
Surp module
Length = 844
Score = 37.1 bits (82), Expect = 0.011
Identities = 18/61 (29%), Positives = 32/61 (52%)
Frame = +1
Query: 265 PQDQDLRNIIDKLAQFVARNGPEFEKMTKNKQKNNPKFSFLYGGEYFNYYQYKVTTEQAI 444
P + L II + + FV+++G + E + + KQ +NP F FL + + Y + Q +
Sbjct: 145 PPTEKLHQIITRTSSFVSKHGGQSEIVLRVKQGDNPTFGFLMPDHHLHLYFRFLVDHQEL 204
Query: 445 L 447
L
Sbjct: 205 L 205
Score = 34.7 bits (76), Expect = 0.056
Identities = 17/58 (29%), Positives = 27/58 (46%)
Frame = +1
Query: 277 DLRNIIDKLAQFVARNGPEFEKMTKNKQKNNPKFSFLYGGEYFNYYQYKVTTEQAILK 450
+++ +IDK+ F+ +NG E E + F FL ++ Y KV E LK
Sbjct: 334 EMKRVIDKIVDFIQKNGKELEATLVAQDVKYGMFPFLRPSSLYHAYYRKVLQEAEELK 391
>At5g55100.1 68418.m06868 SWAP (Suppressor-of-White-APricot)/surp
domain-containing protein contains Pfam domain PF01805:
Surp module
Length = 843
Score = 37.1 bits (82), Expect = 0.011
Identities = 18/61 (29%), Positives = 32/61 (52%)
Frame = +1
Query: 265 PQDQDLRNIIDKLAQFVARNGPEFEKMTKNKQKNNPKFSFLYGGEYFNYYQYKVTTEQAI 444
P + L II + + FV+++G + E + + KQ +NP F FL + + Y + Q +
Sbjct: 145 PPTEKLHQIITRTSSFVSKHGGQSEIVLRVKQGDNPTFGFLMPDHHLHLYFRFLVDHQEL 204
Query: 445 L 447
L
Sbjct: 205 L 205
Score = 34.7 bits (76), Expect = 0.056
Identities = 17/58 (29%), Positives = 27/58 (46%)
Frame = +1
Query: 277 DLRNIIDKLAQFVARNGPEFEKMTKNKQKNNPKFSFLYGGEYFNYYQYKVTTEQAILK 450
+++ +IDK+ F+ +NG E E + F FL ++ Y KV E LK
Sbjct: 334 EMKRVIDKIVDFIQKNGKELEATLVAQDVKYGMFPFLRPSSLYHAYYRKVLQEAEELK 391
>At5g20220.1 68418.m02407 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 393
Score = 34.3 bits (75), Expect = 0.074
Identities = 15/34 (44%), Positives = 18/34 (52%)
Frame = +2
Query: 500 HRTAICNAPTGQRDACSAGSSGLDGGGTCTSAVG 601
H + C PTG +CS +SG DG G T A G
Sbjct: 331 HNSRTCRKPTGVNPSCSGENSGEDGVGKITYACG 364
>At5g06520.1 68418.m00735 SWAP (Suppressor-of-White-APricot)/surp
domain-containing protein contains Pfam profile: PF01805
surp module
Length = 679
Score = 29.9 bits (64), Expect = 1.6
Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Frame = +1
Query: 289 IIDKLAQFVARNGPEFEKMTKNKQKNNPKFSFL--YGGEYFNYYQYKVTTEQAIL 447
II AQF+AR G F + + + NP+F FL F++Y V +L
Sbjct: 490 IIKLTAQFMARYGMNFVQGLRKRVVGNPQFKFLESTNNSRFSFYNGLVIAYSRVL 544
>At5g03980.1 68418.m00378 GDSL-motif lipase/hydrolase family protein
similar to lipase [Arabidopsis thaliana] GI:1145627;
contains Pfam profile:PF00657 Lipase/Acylhydrolase with
GDSL-like motif
Length = 323
Score = 29.1 bits (62), Expect = 2.8
Identities = 13/57 (22%), Positives = 30/57 (52%)
Frame = +1
Query: 268 QDQDLRNIIDKLAQFVARNGPEFEKMTKNKQKNNPKFSFLYGGEYFNYYQYKVTTEQ 438
+D D + L +F + + ++ + +K P + +YG +Y+N +QY + +E+
Sbjct: 196 KDYDDNGCLTHLNEFAMDHNNQLQEAIASLRKEFPDVAIVYG-DYYNAFQYVLRSER 251
>At4g22930.1 68417.m03311 dihydroorotase, mitochondrial / DHOase
(PYR4) identical to SP|O04904 Dihydroorotase,
mitochondrial precursor (EC 3.5.2.3) (DHOase)
{Arabidopsis thaliana}
Length = 377
Score = 28.3 bits (60), Expect = 4.9
Identities = 15/45 (33%), Positives = 22/45 (48%)
Frame = +1
Query: 277 DLRNIIDKLAQFVARNGPEFEKMTKNKQKNNPKFSFLYGGEYFNY 411
D +DKL F + NGP+F + +N K K S + FN+
Sbjct: 313 DEAGALDKLEAFTSFNGPDFYGLPRNSSKITLKKSPWKVPDVFNF 357
>At3g12640.1 68416.m01573 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 674
Score = 27.9 bits (59), Expect = 6.5
Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 7/46 (15%)
Frame = +1
Query: 265 PQDQDLRNIID-------KLAQFVARNGPEFEKMTKNKQKNNPKFS 381
P+D++ RN + Q +A NG FE MT N NP FS
Sbjct: 322 PKDEESRNFSQGQEAVQLQYTQSLANNGVYFENMTTNDTGLNPDFS 367
>At1g58150.1 68414.m06595 hypothetical protein
Length = 91
Score = 27.5 bits (58), Expect = 8.5
Identities = 15/34 (44%), Positives = 17/34 (50%), Gaps = 3/34 (8%)
Frame = -1
Query: 567 RPLDPAEQASRWPVGAL---HIAVLCHIGPGGSG 475
RPL P Q ++P L H A CH G GG G
Sbjct: 27 RPLVPDAQEWKYPKSKLFPRHAAWSCHSGGGGGG 60
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,491,384
Number of Sequences: 28952
Number of extensions: 268940
Number of successful extensions: 831
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 799
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 831
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1412971776
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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