Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021323
         (465 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q896F4 Cluster: Conserved protein; n=1; Clostridium tet...    32   7.1  
UniRef50_Q0M283 Cluster: Sigma-70 region 2:Sigma-70 region 4:Sig...    32   7.1  
UniRef50_A4CN47 Cluster: Putative uncharacterized protein; n=2; ...    32   7.1  
UniRef50_Q2GEH0 Cluster: Preprotein translocase, SecA subunit; n...    31   9.4  

>UniRef50_Q896F4 Cluster: Conserved protein; n=1; Clostridium
           tetani|Rep: Conserved protein - Clostridium tetani
          Length = 165

 Score = 31.9 bits (69), Expect = 7.1
 Identities = 13/39 (33%), Positives = 25/39 (64%)
 Frame = +2

Query: 128 KKKDILFDDVINVRSGKL*LIKNNRIQVESDEVLKIIVV 244
           +KKD L  +V N +  ++  IK+  IQ+E +E+L  +++
Sbjct: 3   RKKDFLLMEVYNEKDKRIGFIKDMIIQLEEEEILGFVII 41


>UniRef50_Q0M283 Cluster: Sigma-70 region 2:Sigma-70 region
           4:Sigma-70, region 4 type 2; n=1; Caulobacter sp.
           K31|Rep: Sigma-70 region 2:Sigma-70 region 4:Sigma-70,
           region 4 type 2 - Caulobacter sp. K31
          Length = 203

 Score = 31.9 bits (69), Expect = 7.1
 Identities = 18/37 (48%), Positives = 23/37 (62%)
 Frame = +2

Query: 305 PPCAAPLDLPMSTLTKLNFTDYVLK*IKPPRDLGQRD 415
           PP AAP+D P + L +L  T+ +L  IK  R  GQRD
Sbjct: 77  PPPAAPIDNPAAYLYRLG-TNLMLDRIKTQRRAGQRD 112


>UniRef50_A4CN47 Cluster: Putative uncharacterized protein; n=2;
           Flavobacteriaceae|Rep: Putative uncharacterized protein
           - Robiginitalea biformata HTCC2501
          Length = 265

 Score = 31.9 bits (69), Expect = 7.1
 Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
 Frame = +2

Query: 68  YLVESEFKVQREIILHRFIIKKKDILFDDVIN--VRSGKL*LIKNNRIQ 208
           Y+  SEF V R+ ++H+      D  FD + N  + SGK+ L++N  ++
Sbjct: 93  YVDNSEFDVNRDTLIHKIRYLGLDPTFDPIQNDLITSGKIRLVQNKPLR 141


>UniRef50_Q2GEH0 Cluster: Preprotein translocase, SecA subunit; n=1;
           Neorickettsia sennetsu str. Miyayama|Rep: Preprotein
           translocase, SecA subunit - Neorickettsia sennetsu
           (strain Miyayama)
          Length = 804

 Score = 31.5 bits (68), Expect = 9.4
 Identities = 23/79 (29%), Positives = 40/79 (50%)
 Frame = +2

Query: 2   TSPVLLTLHAKLRAHRTIKIGIYLVESEFKVQREIILHRFIIKKKDILFDDVINVRSGKL 181
           TS +   L  +L  +  IK   Y+  S  K Q+++    + I+K  I FDDVIN +   +
Sbjct: 580 TSGIRNMLKKQLSNNGAIKHS-YITRSLEKAQKKVESRNYEIRKNLIKFDDVINEQRKVI 638

Query: 182 *LIKNNRIQVESDEVLKII 238
              +NN ++    ++L I+
Sbjct: 639 FSQRNNIMESGDIDLLPIV 657


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 352,445,161
Number of Sequences: 1657284
Number of extensions: 5362783
Number of successful extensions: 12331
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 12113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12329
length of database: 575,637,011
effective HSP length: 94
effective length of database: 419,852,315
effective search space used: 25191138900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)