Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021323
         (465 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0404 - 24952444-24953094                                         29   1.8  
07_01_1143 - 10711023-10711884,10713603-10713826,10714253-107145...    28   4.3  
06_01_0493 - 3536207-3537056,3537603-3537826,3538234-3538503,353...    28   4.3  
09_06_0059 - 20584196-20584288,20584389-20585055,20585411-205857...    27   5.6  
02_03_0098 - 15173484-15173490,15174173-15174393                       27   7.4  
08_02_0069 - 11880841-11880936,11881150-11881221,11881263-118813...    27   9.8  

>04_04_0404 - 24952444-24953094
          Length = 216

 Score = 29.1 bits (62), Expect = 1.8
 Identities = 12/23 (52%), Positives = 13/23 (56%)
 Frame = -1

Query: 318 AAHGGTAVRAASYQQHRGPSTAP 250
           A HGG  VRA  Y + RG   AP
Sbjct: 120 ALHGGKVVRAVEYGERRGSPAAP 142


>07_01_1143 -
           10711023-10711884,10713603-10713826,10714253-10714522,
           10715071-10715175
          Length = 486

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 13/31 (41%), Positives = 14/31 (45%)
 Frame = -1

Query: 339 DMGRSRGAAHGGTAVRAASYQQHRGPSTAPP 247
           + GR    AHGG   RA   QQ  G    PP
Sbjct: 310 EAGRQGHVAHGGMLPRAVISQQQSGDQPQPP 340


>06_01_0493 -
           3536207-3537056,3537603-3537826,3538234-3538503,
           3539042-3539146
          Length = 482

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 13/31 (41%), Positives = 14/31 (45%)
 Frame = -1

Query: 339 DMGRSRGAAHGGTAVRAASYQQHRGPSTAPP 247
           + GR    AHGG   RA   QQ  G    PP
Sbjct: 310 EAGRQGHVAHGGMLPRAVISQQQSGDQPQPP 340


>09_06_0059 -
           20584196-20584288,20584389-20585055,20585411-20585732,
           20585862-20586000,20586261-20586322,20586371-20586434,
           20586674-20586826,20586952-20587082,20587175-20587336,
           20588060-20588264
          Length = 665

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = +2

Query: 95  QREIILHRFIIKKKDILFDDVINVRSGKL 181
           QRE  L++F +K+KD  F+  +  +S KL
Sbjct: 615 QREAALNKFRLKRKDRCFEKKVRYQSRKL 643


>02_03_0098 - 15173484-15173490,15174173-15174393
          Length = 75

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 12/20 (60%), Positives = 14/20 (70%)
 Frame = -2

Query: 332 GGLGAPRTGARRFARRPTSS 273
           G LG P  GARR  RRPT++
Sbjct: 49  GELGGPFKGARRRRRRPTAA 68


>08_02_0069 -
           11880841-11880936,11881150-11881221,11881263-11881343,
           11881471-11881542,11882549-11882770,11882849-11882941,
           11883509-11883601,11884546-11884632,11884958-11884990,
           11885091-11885185,11886590-11886674,11886778-11886864,
           11887757-11887846,11887929-11888057,11888668-11888757,
           11888849-11888908,11889074-11889311,11889852-11890054
          Length = 641

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 11/37 (29%), Positives = 22/37 (59%)
 Frame = +2

Query: 68  YLVESEFKVQREIILHRFIIKKKDILFDDVINVRSGK 178
           Y  E E K++R +++HR I+   + +F  ++   +GK
Sbjct: 474 YSAEDEAKLERPVMIHRAILGSVERMFAILLEHYNGK 510


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,654,065
Number of Sequences: 37544
Number of extensions: 152367
Number of successful extensions: 384
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 377
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 384
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 931320312
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)