Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021323
         (465 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_44978| Best HMM Match : REJ (HMM E-Value=3.9e-13)                   27   5.8  
SB_30826| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.7  

>SB_44978| Best HMM Match : REJ (HMM E-Value=3.9e-13)
          Length = 1819

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 7/17 (41%), Positives = 13/17 (76%)
 Frame = +3

Query: 177  NCN*SKIIAYKWKVMKC 227
            NC+ S ++ +KW++ KC
Sbjct: 995  NCSASSVVTFKWEISKC 1011


>SB_30826| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1375

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
 Frame = -1

Query: 330  RSRGAAHGGT--AVRAASYQQHRGPST 256
            R+RG  HGG   A  +  Y+QHRG S+
Sbjct: 1242 RNRGRRHGGGGGAFSSRDYRQHRGGSS 1268


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,738,219
Number of Sequences: 59808
Number of extensions: 173745
Number of successful extensions: 320
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 302
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 320
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 957531822
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)