Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021320
(528 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_UPI0000F34576 Cluster: Zinc/RING finger protein 3 precu... 34 2.3
UniRef50_Q9M3G8 Cluster: Putative proline-rich protein; n=2; Ara... 29 2.9
UniRef50_Q7NTZ3 Cluster: Putative uncharacterized protein; n=1; ... 32 7.1
UniRef50_Q7XEQ8 Cluster: Transposon protein, putative, CACTA, En... 32 7.1
UniRef50_A5BEH6 Cluster: Putative uncharacterized protein; n=1; ... 32 7.1
UniRef50_Q39R59 Cluster: Superfamily I DNA and RNA helicases and... 32 9.4
UniRef50_Q8S6K1 Cluster: Putative transposase; n=4; Oryza sativa... 32 9.4
UniRef50_Q7XW36 Cluster: OSJNBb0062H02.14 protein; n=8; Oryza sa... 32 9.4
UniRef50_Q7F1U7 Cluster: Arm repeat containing protein homolog-l... 32 9.4
UniRef50_Q5JQT9 Cluster: OSJNBa0061C06.13 protein; n=4; Oryza sa... 32 9.4
UniRef50_Q10P90 Cluster: Transposon protein, putative, CACTA, En... 32 9.4
UniRef50_Q06945 Cluster: Transcription factor SOX-4; n=50; Eutel... 32 9.4
>UniRef50_UPI0000F34576 Cluster: Zinc/RING finger protein 3
precursor (RING finger protein 203).; n=2; Eutheria|Rep:
Zinc/RING finger protein 3 precursor (RING finger
protein 203). - Bos Taurus
Length = 694
Score = 33.9 bits (74), Expect = 2.3
Identities = 19/49 (38%), Positives = 26/49 (53%)
Frame = +2
Query: 350 MRVSEIAID*PRRPCCCFCTEAEMRRQARISGGGALWCXPPPRCKFGCG 496
+R ++ A + P CCC A +GGGAL+ PPP C+ GCG
Sbjct: 457 LRRTKGAREGPSCACCCEPRAPAPEPSAGAAGGGALYLGPPP-CE-GCG 503
>UniRef50_Q9M3G8 Cluster: Putative proline-rich protein; n=2;
Arabidopsis thaliana|Rep: Putative proline-rich protein
- Arabidopsis thaliana (Mouse-ear cress)
Length = 219
Score = 29.5 bits (63), Expect(2) = 2.9
Identities = 10/14 (71%), Positives = 11/14 (78%)
Frame = -1
Query: 468 GXHHRAPPPEIRAC 427
G HHR+PPP I AC
Sbjct: 32 GHHHRSPPPAITAC 45
Score = 23.0 bits (47), Expect(2) = 2.9
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = -1
Query: 498 QPQPNLQRGGGXHHRAPPP 442
QP P L G H R+PPP
Sbjct: 11 QPPP-LATTAGHHRRSPPP 28
>UniRef50_Q7NTZ3 Cluster: Putative uncharacterized protein; n=1;
Chromobacterium violaceum|Rep: Putative uncharacterized
protein - Chromobacterium violaceum
Length = 232
Score = 32.3 bits (70), Expect = 7.1
Identities = 19/44 (43%), Positives = 22/44 (50%), Gaps = 4/44 (9%)
Frame = -1
Query: 363 SETRILSTSPSPHSNSAQ--IPCKCKRLRSIERI--IQYLVRCN 244
SE L T P P SNS + IP C R ER I+Y + CN
Sbjct: 172 SEIHALKTEPMPESNSLKLSIPNACLRQLQAERCIHIKYFINCN 215
>UniRef50_Q7XEQ8 Cluster: Transposon protein, putative, CACTA,
En/Spm sub-class; n=16; Oryza sativa (japonica
cultivar-group)|Rep: Transposon protein, putative,
CACTA, En/Spm sub-class - Oryza sativa subsp. japonica
(Rice)
Length = 1005
Score = 32.3 bits (70), Expect = 7.1
Identities = 20/51 (39%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Frame = -3
Query: 232 ITKFHSLIELKRCFKNKHV--VNLTQKLPIIFRWKCPPKSDHAIQSYWVFF 86
I+K+ L +LK H V +TQ LP+ R PPK H IQ FF
Sbjct: 572 ISKYVKLDDLKLVGMKSHDCHVLITQILPVAIRGILPPKVHHTIQRLCAFF 622
>UniRef50_A5BEH6 Cluster: Putative uncharacterized protein; n=1;
Vitis vinifera|Rep: Putative uncharacterized protein -
Vitis vinifera (Grape)
Length = 905
Score = 32.3 bits (70), Expect = 7.1
Identities = 16/54 (29%), Positives = 27/54 (50%)
Frame = +2
Query: 41 TYRSLLFFRTSKRSAKKNPITLNCVI*LRGTFPSKYNREFLC*VNYVFIFKASL 202
TY LL + S+R + NP + ++ + + R+FLC + Y+ F A L
Sbjct: 81 TYGKLLGYMVSERGIEANPYKIRAILDMLAPRTKRKIRDFLCRLQYISRFIARL 134
>UniRef50_Q39R59 Cluster: Superfamily I DNA and RNA helicases and
helicase subunits-like; n=1; Geobacter metallireducens
GS-15|Rep: Superfamily I DNA and RNA helicases and
helicase subunits-like - Geobacter metallireducens
(strain GS-15 / ATCC 53774 / DSM 7210)
Length = 1790
Score = 31.9 bits (69), Expect = 9.4
Identities = 15/51 (29%), Positives = 30/51 (58%)
Frame = -1
Query: 462 HHRAPPPEIRACRRISASVQKQQQGLLG*SIAISETRILSTSPSPHSNSAQ 310
HHR P ++ I+A++ K++QG S ++++T+ + +P P S +Q
Sbjct: 36 HHREKPKAVQLRNEITATLAKKKQG----STSVADTKQQAAAPKPLSTPSQ 82
>UniRef50_Q8S6K1 Cluster: Putative transposase; n=4; Oryza
sativa|Rep: Putative transposase - Oryza sativa (Rice)
Length = 866
Score = 31.9 bits (69), Expect = 9.4
Identities = 20/51 (39%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Frame = -3
Query: 232 ITKFHSLIELKRCFKNKHV--VNLTQKLPIIFRWKCPPKSDHAIQSYWVFF 86
I+K+ L +LK H V +TQ LP+ R PPK H IQ FF
Sbjct: 490 ISKYVKLDDLKLVGMKSHDCHVLITQILPVAIRGILPPKVRHTIQRLCAFF 540
>UniRef50_Q7XW36 Cluster: OSJNBb0062H02.14 protein; n=8; Oryza
sativa (japonica cultivar-group)|Rep: OSJNBb0062H02.14
protein - Oryza sativa subsp. japonica (Rice)
Length = 953
Score = 31.9 bits (69), Expect = 9.4
Identities = 20/51 (39%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Frame = -3
Query: 232 ITKFHSLIELKRCFKNKHV--VNLTQKLPIIFRWKCPPKSDHAIQSYWVFF 86
I+K+ L +LK H V +TQ LP+ R PPK H IQ FF
Sbjct: 539 ISKYVKLDDLKLVGMKSHDCHVLITQILPVAIRGILPPKVRHTIQRLCAFF 589
>UniRef50_Q7F1U7 Cluster: Arm repeat containing protein
homolog-like; n=6; Magnoliophyta|Rep: Arm repeat
containing protein homolog-like - Oryza sativa subsp.
japonica (Rice)
Length = 467
Score = 31.9 bits (69), Expect = 9.4
Identities = 17/53 (32%), Positives = 27/53 (50%)
Frame = -2
Query: 431 PVAASRPQYKSSNKAFSASR*RFLRPASCPHHPHLIATVHRSHASASDYVQLS 273
P AA+R Q + + + R L+P SCP PH +A + + + SD L+
Sbjct: 16 PCAAARSQRRGAGYSMRTIRSALLQPDSCPGSPH-VAAAYDAAGADSDMENLT 67
>UniRef50_Q5JQT9 Cluster: OSJNBa0061C06.13 protein; n=4; Oryza
sativa|Rep: OSJNBa0061C06.13 protein - Oryza sativa
(Rice)
Length = 551
Score = 31.9 bits (69), Expect = 9.4
Identities = 20/51 (39%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Frame = -3
Query: 232 ITKFHSLIELKRCFKNKHV--VNLTQKLPIIFRWKCPPKSDHAIQSYWVFF 86
I+K+ L +LK H V +TQ LP+ R PPK H IQ FF
Sbjct: 339 ISKYVKLDDLKLVGMKSHDCHVLITQILPVAIRGILPPKVRHTIQHLCAFF 389
>UniRef50_Q10P90 Cluster: Transposon protein, putative, CACTA,
En/Spm sub-class; n=5; Oryza sativa (japonica
cultivar-group)|Rep: Transposon protein, putative,
CACTA, En/Spm sub-class - Oryza sativa subsp. japonica
(Rice)
Length = 1111
Score = 31.9 bits (69), Expect = 9.4
Identities = 20/51 (39%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Frame = -3
Query: 232 ITKFHSLIELKRCFKNKHV--VNLTQKLPIIFRWKCPPKSDHAIQSYWVFF 86
I+K+ L +LK H V +TQ LP+ R PPK H IQ FF
Sbjct: 374 ISKYVKLDDLKLVGMKSHDCHVLITQILPVAIRGILPPKVRHTIQRLCAFF 424
>UniRef50_Q06945 Cluster: Transcription factor SOX-4; n=50;
Euteleostomi|Rep: Transcription factor SOX-4 - Homo
sapiens (Human)
Length = 474
Score = 31.9 bits (69), Expect = 9.4
Identities = 19/64 (29%), Positives = 30/64 (46%)
Frame = -2
Query: 482 CSAEAEXTIGRRRLRSEPVAASRPQYKSSNKAFSASR*RFLRPASCPHHPHLIATVHRSH 303
CS +A GR S P A P + ++ +++ R P+S P H A+ H S
Sbjct: 332 CSPDAPSLSGRSSAASSPAAGRSP---ADHRGYASLRAASPAPSSAPSHASSSASSHSSS 388
Query: 302 ASAS 291
+S+S
Sbjct: 389 SSSS 392
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 534,405,902
Number of Sequences: 1657284
Number of extensions: 10333920
Number of successful extensions: 26578
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 25770
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26546
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 33455602480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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