Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021320
         (528 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3A11.02 |cps3|mug188|zinc finger protein Cps3|Schizosaccharo...    28   0.75 
SPBP19A11.04c |mor2|cps12|morphogenesis protein Mor2|Schizosacch...    26   4.0  
SPCC1235.05c |fft2||fun thirty related protein Fft2|Schizosaccha...    26   4.0  
SPBC3D6.02 |but2||But2 family protein But2 |Schizosaccharomyces ...    25   5.3  
SPAC2F7.07c |||histone deacetylase complex subunit Rco1 |Schizos...    25   5.3  
SPCC777.13 |vps35||retromer complex subunit Vps35|Schizosaccharo...    25   5.3  
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb...    25   7.0  
SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyc...    25   9.2  
SPAC19A8.02 |||transcriptional coactivator |Schizosaccharomyces ...    25   9.2  
SPCC1223.02 |nmt1|thi3|no message in thiamine Nmt1|Schizosacchar...    25   9.2  

>SPAC3A11.02 |cps3|mug188|zinc finger protein
           Cps3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 583

 Score = 28.3 bits (60), Expect = 0.75
 Identities = 23/70 (32%), Positives = 33/70 (47%), Gaps = 2/70 (2%)
 Frame = -2

Query: 488 QTCSAEAEXTIGRRRLRSEPV--AASRPQYKSSNKAFSASR*RFLRPASCPHHPHLIATV 315
           +T  A  E T G   +RS     + S    KSS   FS S+  FL  +S PH P   A +
Sbjct: 206 ETIPAYVEATNGSSTVRSPHAKRSLSSISVKSSTSPFSGSK--FLSSSSYPHTPE--AHL 261

Query: 314 HRSHASASDY 285
           + +H S + +
Sbjct: 262 NSNHISPASF 271


>SPBP19A11.04c |mor2|cps12|morphogenesis protein
            Mor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2196

 Score = 25.8 bits (54), Expect = 4.0
 Identities = 9/29 (31%), Positives = 19/29 (65%)
 Frame = +3

Query: 321  CYEVRVMWTGCGSQKSLSTSREGLVAAFV 407
            C+++   WTG G  ++++ +RE L+ A +
Sbjct: 1047 CWKLLDEWTGFGPARAITKNREELMRAHI 1075


>SPCC1235.05c |fft2||fun thirty related protein
           Fft2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1284

 Score = 25.8 bits (54), Expect = 4.0
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = -2

Query: 449 RRLRSEPVAASRPQYKSSNKAFSASR 372
           +R +  PVA++ P Y SSN+   + +
Sbjct: 314 KRFKQSPVASNMPTYGSSNRTVQSQK 339


>SPBC3D6.02 |but2||But2 family protein But2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 390

 Score = 25.4 bits (53), Expect = 5.3
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = -1

Query: 357 TRILSTSPSPHSNSAQIPCKCKRL 286
           T  LS+ P P + SA IP K  RL
Sbjct: 204 TEALSSLPLPRNLSADIPAKSSRL 227


>SPAC2F7.07c |||histone deacetylase complex subunit Rco1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 607

 Score = 25.4 bits (53), Expect = 5.3
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = -3

Query: 142 RWKCPPKSDHAIQSY 98
           +WKCP  SDH    Y
Sbjct: 450 KWKCPNHSDHVTPRY 464


>SPCC777.13 |vps35||retromer complex subunit
           Vps35|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 785

 Score = 25.4 bits (53), Expect = 5.3
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = -1

Query: 267 IQYLVRCNYCLTLQSFIPLSSLSD 196
           + Y    +YCL LQ+F+P+ +  D
Sbjct: 392 LTYFPSFSYCLELQNFLPVFNAQD 415


>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 2386

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +3

Query: 6    EVCFANRCRVSLRIVLYFFFV 68
            E+  +N CR+S++I  YFF V
Sbjct: 1878 ELMNSNVCRLSMKIPQYFFLV 1898


>SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 987

 Score = 24.6 bits (51), Expect = 9.2
 Identities = 12/36 (33%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = -1

Query: 294 KRLRSIERIIQYLVRCNY-CLTLQSFIPLSSLSDAL 190
           K  ++   +I + ++  Y CL+LQ+F  L S+  AL
Sbjct: 812 KNTKARTAVISFFIQTAYKCLSLQNFSTLMSIVSAL 847


>SPAC19A8.02 |||transcriptional coactivator |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1213

 Score = 24.6 bits (51), Expect = 9.2
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = -1

Query: 120  QITQFKVIGFFFADRFDVRKKSKERYVATRGSGWRNK 10
            Q  Q +++G   A  FD+   S +RY  +    WRN+
Sbjct: 1151 QYIQQELLGCDKAREFDLYPPSMQRYCDSCTQDWRNR 1187


>SPCC1223.02 |nmt1|thi3|no message in thiamine
           Nmt1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 346

 Score = 24.6 bits (51), Expect = 9.2
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +2

Query: 338 DVDRMRVSEIAID*PRRPCCCFCT 409
           DV  +R+  +A       CCCFCT
Sbjct: 180 DVQMLRIDRLA----NLGCCCFCT 199


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,171,868
Number of Sequences: 5004
Number of extensions: 42442
Number of successful extensions: 98
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 216376042
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)