Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021320
(528 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1062 + 23668334-23669644,23670676-23670764,23671494-23671584 32 0.33
01_05_0743 + 24835349-24836009,24836925-24837068,24837154-248373... 30 1.0
05_05_0315 - 24030695-24030787,24030896-24030995,24031120-240312... 29 2.3
05_07_0280 - 28920864-28920971,28921076-28921175,28921267-289213... 29 3.1
02_04_0435 + 22912993-22913456,22913847-22914012,22914096-229141... 29 3.1
09_02_0527 + 10234622-10235773 28 4.0
03_02_0440 - 8500068-8501252 28 4.0
01_06_0319 - 28441082-28441102,28441630-28441701,28442568-284426... 28 4.0
02_05_0402 + 28687597-28687671,28688123-28688235,28688927-286894... 28 5.3
>07_03_1062 + 23668334-23669644,23670676-23670764,23671494-23671584
Length = 496
Score = 31.9 bits (69), Expect = 0.33
Identities = 17/53 (32%), Positives = 27/53 (50%)
Frame = -2
Query: 431 PVAASRPQYKSSNKAFSASR*RFLRPASCPHHPHLIATVHRSHASASDYVQLS 273
P AA+R Q + + + R L+P SCP PH +A + + + SD L+
Sbjct: 16 PCAAARSQRRGAGYSMRTIRSALLQPDSCPGSPH-VAAAYDAAGADSDMENLT 67
>01_05_0743 +
24835349-24836009,24836925-24837068,24837154-24837306,
24837627-24837742,24837826-24837993,24838610-24838737,
24838827-24838926,24839119-24839205
Length = 518
Score = 30.3 bits (65), Expect = 1.0
Identities = 10/33 (30%), Positives = 24/33 (72%)
Frame = -3
Query: 253 QVQLLFNITKFHSLIELKRCFKNKHVVNLTQKL 155
+VQ++ ++T +++EL+ ++++H VNL +L
Sbjct: 114 EVQIMHHLTGHRNIVELRGAYEDRHSVNLIMEL 146
>05_05_0315 -
24030695-24030787,24030896-24030995,24031120-24031247,
24031350-24031517,24031626-24031741,24031773-24031896,
24032085-24032254,24032255-24032999
Length = 547
Score = 29.1 bits (62), Expect = 2.3
Identities = 10/33 (30%), Positives = 23/33 (69%)
Frame = -3
Query: 253 QVQLLFNITKFHSLIELKRCFKNKHVVNLTQKL 155
+VQ+++++ ++ELK +++KH V+L +L
Sbjct: 116 EVQIMYHLAGQPGVVELKGAYEDKHAVHLVMEL 148
>05_07_0280 -
28920864-28920971,28921076-28921175,28921267-28921394,
28922013-28922180,28922280-28922395,28922584-28922736,
28922904-28923047,28923401-28924133
Length = 549
Score = 28.7 bits (61), Expect = 3.1
Identities = 9/33 (27%), Positives = 23/33 (69%)
Frame = -3
Query: 253 QVQLLFNITKFHSLIELKRCFKNKHVVNLTQKL 155
+V ++ ++T +++EL+ ++++H VNL +L
Sbjct: 138 EVHIMHHLTGHRNIVELRGAYEDRHSVNLVMEL 170
>02_04_0435 +
22912993-22913456,22913847-22914012,22914096-22914146,
22914353-22914578,22915275-22915963,22916055-22916408
Length = 649
Score = 28.7 bits (61), Expect = 3.1
Identities = 15/50 (30%), Positives = 24/50 (48%)
Frame = -1
Query: 456 RAPPPEIRACRRISASVQKQQQGLLG*SIAISETRILSTSPSPHSNSAQI 307
R P + +I +V + +QG+L S+ SE + P P S AQ+
Sbjct: 525 RLPDSGPQRKEKIEGTVWELEQGMLANSLPSSEAKTWQAFPDPKSQPAQV 574
>09_02_0527 + 10234622-10235773
Length = 383
Score = 28.3 bits (60), Expect = 4.0
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = -2
Query: 500 NSHSQTCSAEAEXTIGRRRLRSEPVAASRPQYKSSNK 390
+S + C A IGRR+L + V S P+Y+ +K
Sbjct: 58 DSGAYRCEASFRLLIGRRKLAAFAVVVSGPRYRDVHK 94
>03_02_0440 - 8500068-8501252
Length = 394
Score = 28.3 bits (60), Expect = 4.0
Identities = 18/60 (30%), Positives = 29/60 (48%)
Frame = -1
Query: 426 RRISASVQKQQQGLLG*SIAISETRILSTSPSPHSNSAQIPCKCKRLRSIERIIQYLVRC 247
RR + S L+ S ++S T S S +P S + C+R RS E ++ ++ RC
Sbjct: 318 RRPTGSTTTAAAALVAAS-SLSATSAPSGSDNPGGESKLLMTTCRRRRSKEELMNHMRRC 376
>01_06_0319 - 28441082-28441102,28441630-28441701,28442568-28442627,
28442918-28443105,28444300-28444327,28444880-28444907,
28444942-28445163,28445238-28445409,28446224-28447468,
28447573-28447741,28447820-28448045,28449096-28449451,
28449530-28449724,28450655-28450864,28451729-28452004
Length = 1155
Score = 28.3 bits (60), Expect = 4.0
Identities = 24/86 (27%), Positives = 39/86 (45%), Gaps = 3/86 (3%)
Frame = +3
Query: 132 HFHRN--IIGSFCVKLTTCLFLKHRLSSIRE*NFVMLNNSCT*PNTGLYAQ-LNVIACTC 302
H+ RN ++ + C KL TC F ++S +ML + +TG L V C
Sbjct: 992 HYKRNCKLVAACCNKLFTCRFCHDKISDHTMERILMLPDHTRESDTGDDVHGLGVDFFHC 1051
Query: 303 MGSVHCCYEVRVMWTGCGSQKSLSTS 380
M +CC +++ C +K L T+
Sbjct: 1052 M-KCNCCLGMKLTEHKC-REKGLETN 1075
>02_05_0402 +
28687597-28687671,28688123-28688235,28688927-28689432,
28689544-28689717,28689953-28690082,28692241-28692772,
28693578-28693823,28694648-28695061
Length = 729
Score = 27.9 bits (59), Expect = 5.3
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = -1
Query: 345 STSPSPHSNSAQIPCKC 295
+T+P PHS++ Q PC C
Sbjct: 181 ATAPDPHSSTIQSPCCC 197
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,076,012
Number of Sequences: 37544
Number of extensions: 309291
Number of successful extensions: 932
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 892
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 929
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1166441080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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