Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021320
         (528 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_47383| Best HMM Match : LON (HMM E-Value=1.3)                       30   1.0  
SB_55577| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.1  
SB_14317| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.1  
SB_28115| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.5  
SB_22749| Best HMM Match : CITED (HMM E-Value=8.7)                     28   5.5  
SB_58599| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.2  
SB_44544| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.2  
SB_36553| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.6  

>SB_47383| Best HMM Match : LON (HMM E-Value=1.3)
          Length = 1528

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
 Frame = -1

Query: 354  RILSTSPSPHSNSAQIPCKCKRLRSIE-RIIQYLVRCNYCLTLQSFIPLSSLSDALK 187
            R  + SP     S +   +CK   SI+ R+I+  +RC   +T    +P+++ S+ LK
Sbjct: 985  RYSALSPVNFRRSDRNLNRCKTKESIKIRVIKQAIRCKLSITSSKKLPINTASNILK 1041


>SB_55577| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 272

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 14/35 (40%), Positives = 17/35 (48%)
 Frame = +2

Query: 335 GDVDRMRVSEIAID*PRRPCCCFCTEAEMRRQARI 439
           G V  MR S   ++ P  PCCC C    + R  RI
Sbjct: 67  GPVQGMRTS-CHVELPVSPCCCLCRRVAVFRVLRI 100


>SB_14317| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 417

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 18/56 (32%), Positives = 25/56 (44%)
 Frame = -2

Query: 437 SEPVAASRPQYKSSNKAFSASR*RFLRPASCPHHPHLIATVHRSHASASDYVQLSV 270
           S+ V  S  +    N  F+A   RF     CP  PH   T H++  S S   +LS+
Sbjct: 203 SDKVNKSSVKIPRINAEFNA---RFENGEECPERPHTAPTGHKAKQSRSQRDELSL 255


>SB_28115| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 698

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 13/41 (31%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
 Frame = -3

Query: 262 VFGQVQLLFNITKFHSLIELK-RCFKNKHVVNLTQKLPIIF 143
           VFG++ +L+N  +  ++ E+K R  K +H++   +K   IF
Sbjct: 548 VFGELAILYNCRRTATVTEMKSRTEKMRHIIEEAEKKEKIF 588


>SB_22749| Best HMM Match : CITED (HMM E-Value=8.7)
          Length = 227

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 13/45 (28%), Positives = 22/45 (48%)
 Frame = -2

Query: 521 IVLELNINSHSQTCSAEAEXTIGRRRLRSEPVAASRPQYKSSNKA 387
           + ++ N+N H  T     +  +     R EP+  + PQY+S N A
Sbjct: 30  VAMQENVNQHQHTIPEMGDNEVAPLENR-EPIPDTIPQYESVNNA 73


>SB_58599| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 616

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -3

Query: 322 QQCTDPMQVQAITFN*AYNPVFGQVQLLFNITKFH 218
           QQC+D  +V  IT    +  +FG  +L ++  K H
Sbjct: 254 QQCSDEEKVWVITIEKLFTDLFGHDKLAYHYDKDH 288


>SB_44544| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1480

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 17/59 (28%), Positives = 27/59 (45%)
 Frame = +3

Query: 162  CVKLTTCLFLKHRLSSIRE*NFVMLNNSCT*PNTGLYAQLNVIACTCMGSVHCCYEVRV 338
            CV L+ C+ L    S +   +  +L+  C    T LYA +N+  C C+     C  + V
Sbjct: 1160 CVNLSVCVCLPVCFSCVHL-SVRVLSPVCPRVFTCLYACVNLSVCVCLPVCFSCVHLSV 1217


>SB_36553| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 684

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = -3

Query: 184 KHVVNLTQKLPIIFRWKCPPKSDHAIQSYWVFF 86
           K V N T    I   W  P ++  AIQ+Y V+F
Sbjct: 453 KPVDNTTTSEEITLEWSKPDENGGAIQAYTVYF 485


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,752,447
Number of Sequences: 59808
Number of extensions: 328490
Number of successful extensions: 828
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 743
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 826
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1197191618
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)