Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021320
         (528 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X70683-1|CAA50018.1|  474|Homo sapiens SOX-4 protein protein.          32   1.4  
BC072668-1|AAH72668.1|  474|Homo sapiens SOX4 protein protein.         32   1.4  
AL136179-1|CAC03595.1|  474|Homo sapiens SRY (sex determining re...    32   1.4  
AC004794-2|AAC18917.1|  512|Homo sapiens F02569_2 protein.             30   4.4  

>X70683-1|CAA50018.1|  474|Homo sapiens SOX-4 protein protein.
          Length = 474

 Score = 31.9 bits (69), Expect = 1.4
 Identities = 19/64 (29%), Positives = 30/64 (46%)
 Frame = -2

Query: 482 CSAEAEXTIGRRRLRSEPVAASRPQYKSSNKAFSASR*RFLRPASCPHHPHLIATVHRSH 303
           CS +A    GR    S P A   P   + ++ +++ R     P+S P H    A+ H S 
Sbjct: 332 CSPDAPSLSGRSSAASSPAAGRSP---ADHRGYASLRAASPAPSSAPSHASSSASSHSSS 388

Query: 302 ASAS 291
           +S+S
Sbjct: 389 SSSS 392


>BC072668-1|AAH72668.1|  474|Homo sapiens SOX4 protein protein.
          Length = 474

 Score = 31.9 bits (69), Expect = 1.4
 Identities = 19/64 (29%), Positives = 30/64 (46%)
 Frame = -2

Query: 482 CSAEAEXTIGRRRLRSEPVAASRPQYKSSNKAFSASR*RFLRPASCPHHPHLIATVHRSH 303
           CS +A    GR    S P A   P   + ++ +++ R     P+S P H    A+ H S 
Sbjct: 332 CSPDAPSLSGRSSAASSPAAGRSP---ADHRGYASLRAASPAPSSAPSHASSSASSHSSS 388

Query: 302 ASAS 291
           +S+S
Sbjct: 389 SSSS 392


>AL136179-1|CAC03595.1|  474|Homo sapiens SRY (sex determining
           region Y)-box 4 protein.
          Length = 474

 Score = 31.9 bits (69), Expect = 1.4
 Identities = 19/64 (29%), Positives = 30/64 (46%)
 Frame = -2

Query: 482 CSAEAEXTIGRRRLRSEPVAASRPQYKSSNKAFSASR*RFLRPASCPHHPHLIATVHRSH 303
           CS +A    GR    S P A   P   + ++ +++ R     P+S P H    A+ H S 
Sbjct: 332 CSPDAPSLSGRSSAASSPAAGRSP---ADHRGYASLRAASPAPSSAPSHASSSASSHSSS 388

Query: 302 ASAS 291
           +S+S
Sbjct: 389 SSSS 392


>AC004794-2|AAC18917.1|  512|Homo sapiens F02569_2 protein.
          Length = 512

 Score = 30.3 bits (65), Expect = 4.4
 Identities = 17/74 (22%), Positives = 33/74 (44%)
 Frame = -1

Query: 468 GXHHRAPPPEIRACRRISASVQKQQQGLLG*SIAISETRILSTSPSPHSNSAQIPCKCKR 289
           G  H+  PP  + C+    +V+ + QGLL   + +SE +    +  P      +P   +R
Sbjct: 188 GLRHQPLPPGQQRCQAQQLAVRLEPQGLLYAKLTLSEQQEAPATAEPRVFGLPLPLLVER 247

Query: 288 LRSIERIIQYLVRC 247
            R   ++   + +C
Sbjct: 248 ERPPGQVPLIIQKC 261


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 77,574,541
Number of Sequences: 237096
Number of extensions: 1547145
Number of successful extensions: 11055
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 10785
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11047
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 5103531180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)