Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021320
         (528 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00041-1|AAA50671.3| 2248|Caenorhabditis elegans Abnormal cell l...    31   0.51 
AF245435-1|AAF87497.1| 2248|Caenorhabditis elegans zinc finger p...    31   0.51 
U00064-1|AAD31935.1|  845|Caenorhabditis elegans Hypothetical pr...    28   3.6  
Z81039-2|CAB02774.1| 2150|Caenorhabditis elegans Hypothetical pr...    28   4.8  
M85149-1|AAA28144.1| 2150|Caenorhabditis elegans zinc finger pro...    28   4.8  
U55366-2|AAA97981.1|  156|Caenorhabditis elegans Hypothetical pr...    27   6.3  
U00049-7|AAC47054.1|  582|Caenorhabditis elegans Hypothetical pr...    27   8.3  
AL132876-20|CAD92404.1| 1127|Caenorhabditis elegans Hypothetical...    27   8.3  
AL132876-19|CAD21673.1| 1161|Caenorhabditis elegans Hypothetical...    27   8.3  
AF016446-2|AAC24165.1|   70|Caenorhabditis elegans Hypothetical ...    27   8.3  

>U00041-1|AAA50671.3| 2248|Caenorhabditis elegans Abnormal cell
           lineage protein 13 protein.
          Length = 2248

 Score = 31.1 bits (67), Expect = 0.51
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = -3

Query: 235 NITKFHSLIELKRCFKNKHVVNLT 164
           NI +FHS++E++  FK KH  N T
Sbjct: 481 NIEEFHSVVEIEEHFKEKHEANHT 504


>AF245435-1|AAF87497.1| 2248|Caenorhabditis elegans zinc finger
           protein LIN-13 protein.
          Length = 2248

 Score = 31.1 bits (67), Expect = 0.51
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = -3

Query: 235 NITKFHSLIELKRCFKNKHVVNLT 164
           NI +FHS++E++  FK KH  N T
Sbjct: 481 NIEEFHSVVEIEEHFKEKHEANHT 504


>U00064-1|AAD31935.1|  845|Caenorhabditis elegans Hypothetical
           protein ZC155.3 protein.
          Length = 845

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 15/46 (32%), Positives = 21/46 (45%)
 Frame = +3

Query: 264 GLYAQLNVIACTCMGSVHCCYEVRVMWTGCGSQKSLSTSREGLVAA 401
           G+Y   N  + TC+   H     +VMWT CG  K     R  + A+
Sbjct: 478 GVYGYNNTTSTTCV-QTHDSARDQVMWTTCGIWKLCQMCRTWIKAS 522


>Z81039-2|CAB02774.1| 2150|Caenorhabditis elegans Hypothetical protein
            C25D7.3 protein.
          Length = 2150

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 10/36 (27%), Positives = 17/36 (47%)
 Frame = -1

Query: 498  QPQPNLQRGGGXHHRAPPPEIRACRRISASVQKQQQ 391
            QP P   +  G   +  PP I   R++  S+ K ++
Sbjct: 1499 QPNPKSSKKRGRRRKKTPPHIAKARKVFTSISKTEE 1534


>M85149-1|AAA28144.1| 2150|Caenorhabditis elegans zinc finger protein
            protein.
          Length = 2150

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 10/36 (27%), Positives = 17/36 (47%)
 Frame = -1

Query: 498  QPQPNLQRGGGXHHRAPPPEIRACRRISASVQKQQQ 391
            QP P   +  G   +  PP I   R++  S+ K ++
Sbjct: 1499 QPNPKSSKKRGRRRKKTPPHIAKARKVFTSISKTEE 1534


>U55366-2|AAA97981.1|  156|Caenorhabditis elegans Hypothetical
           protein F41F3.3 protein.
          Length = 156

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 10/19 (52%), Positives = 10/19 (52%)
 Frame = +2

Query: 443 GGGALWCXPPPRCKFGCGC 499
           GGG   C PPP     CGC
Sbjct: 23  GGGGCGCAPPPPPPSPCGC 41


>U00049-7|AAC47054.1|  582|Caenorhabditis elegans Hypothetical
           protein C18F10.7a protein.
          Length = 582

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +1

Query: 427 TGSDLRRRRPMVXSASALQVWLWL 498
           TG D+ +RR +V  ++A Q  LW+
Sbjct: 344 TGCDIGKRREVVKKSNAFQATLWM 367


>AL132876-20|CAD92404.1| 1127|Caenorhabditis elegans Hypothetical
           protein Y105E8A.24b protein.
          Length = 1127

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = -2

Query: 368 RFLRPASCPHHPHLIATVHRSHASASDYVQL 276
           R + P+  PHH    +T++ +++ +S YVQL
Sbjct: 298 RMVSPSDSPHHATSSSTLNGANSMSSLYVQL 328


>AL132876-19|CAD21673.1| 1161|Caenorhabditis elegans Hypothetical
           protein Y105E8A.24a protein.
          Length = 1161

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = -2

Query: 368 RFLRPASCPHHPHLIATVHRSHASASDYVQL 276
           R + P+  PHH    +T++ +++ +S YVQL
Sbjct: 298 RMVSPSDSPHHATSSSTLNGANSMSSLYVQL 328


>AF016446-2|AAC24165.1|   70|Caenorhabditis elegans Hypothetical
           protein C02E7.6 protein.
          Length = 70

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 10/18 (55%), Positives = 10/18 (55%)
 Frame = +2

Query: 443 GGGALWCXPPPRCKFGCG 496
           GGG   C PPP    GCG
Sbjct: 23  GGGGCGCAPPPPPACGCG 40


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,376,277
Number of Sequences: 27780
Number of extensions: 252374
Number of successful extensions: 688
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 656
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 683
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1038911524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)