Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021320
         (528 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    23   1.5  
AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    23   1.9  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    23   2.6  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                22   4.5  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    21   7.8  

>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 23.4 bits (48), Expect = 1.5
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = -1

Query: 450 PPPEIRACRRISASVQKQQQGLLG*SIAIS 361
           P P    C+ I++SV   ++G LG S+AI+
Sbjct: 588 PDPXPNTCKVIASSVSAGEEG-LGNSLAIT 616


>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -3

Query: 181 HVVNLTQKLPIIFRWK 134
           H  NLT  L +I+ WK
Sbjct: 21  HSRNLTNSLKVIYEWK 36


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 22.6 bits (46), Expect = 2.6
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = -2

Query: 353 ASCPHHPHLIATVHRSHASA 294
           A+ PHH H     H S+ +A
Sbjct: 437 AATPHHQHSTPLAHSSYPAA 456


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.8 bits (44), Expect = 4.5
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -2

Query: 362 LRPASCPHHPHLIATVHRS 306
           L+P+   HH HL + + RS
Sbjct: 279 LQPSLASHHSHLSSALGRS 297


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 21.0 bits (42), Expect = 7.8
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -2

Query: 431 PVAASRPQYKSSNKAFSASR 372
           P+ A RP + S  KAF+  +
Sbjct: 324 PLGAGRPAFWSLRKAFARKK 343


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 151,678
Number of Sequences: 438
Number of extensions: 3494
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14845611
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)