Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021320
         (528 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g11430.1 68417.m01841 hydroxyproline-rich glycoprotein family...    29   0.083
At5g19360.1 68418.m02307 calcium-dependent protein kinase, putat...    29   1.5  
At5g12180.1 68418.m01429 calcium-dependent protein kinase, putat...    29   1.5  
At3g56580.2 68416.m06292 zinc finger (C3HC4-type RING finger) fa...    29   2.6  
At3g56580.1 68416.m06291 zinc finger (C3HC4-type RING finger) fa...    29   2.6  
At4g12330.1 68417.m01951 cytochrome P450 family protein contains...    28   4.5  
At5g02180.1 68418.m00139 amino acid transporter family protein b...    27   5.9  
At2g45520.1 68415.m05661 expressed protein                             27   7.8  

>At4g11430.1 68417.m01841 hydroxyproline-rich glycoprotein family
           protein contains proline-rich extensin domains,
           INTERPRO:IPR002965; related to hydroxyproline-rich
           glycoprotein [Phaseolus vulgaris] gi|169349|gb|AAA33765
          Length = 219

 Score = 29.5 bits (63), Expect(2) = 0.083
 Identities = 10/14 (71%), Positives = 11/14 (78%)
 Frame = -1

Query: 468 GXHHRAPPPEIRAC 427
           G HHR+PPP I AC
Sbjct: 32  GHHHRSPPPAITAC 45



 Score = 23.0 bits (47), Expect(2) = 0.083
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = -1

Query: 498 QPQPNLQRGGGXHHRAPPP 442
           QP P L    G H R+PPP
Sbjct: 11  QPPP-LATTAGHHRRSPPP 28


>At5g19360.1 68418.m02307 calcium-dependent protein kinase, putative
           / CDPK, putative similar to calcium-dependent protein
           kinase [Marchantia polymorpha] gi|5162877|dbj|BAA81748
          Length = 523

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 11/33 (33%), Positives = 24/33 (72%)
 Frame = -3

Query: 253 QVQLLFNITKFHSLIELKRCFKNKHVVNLTQKL 155
           +VQ++ ++T   +++ELK  +++KH V+L  +L
Sbjct: 116 EVQIMHHLTGQPNIVELKGAYEDKHSVHLVMEL 148


>At5g12180.1 68418.m01429 calcium-dependent protein kinase, putative
           / CDPK, putative
          Length = 528

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 11/33 (33%), Positives = 24/33 (72%)
 Frame = -3

Query: 253 QVQLLFNITKFHSLIELKRCFKNKHVVNLTQKL 155
           +VQ++ ++T   +++ELK  +++KH V+L  +L
Sbjct: 121 EVQIMHHLTGQPNIVELKGAYEDKHSVHLVMEL 153


>At3g56580.2 68416.m06292 zinc finger (C3HC4-type RING finger)
           family protein contains INTERPRO domain, IPR001841, RING
           finger
          Length = 320

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 21/89 (23%), Positives = 38/89 (42%)
 Frame = -1

Query: 480 QRGGGXHHRAPPPEIRACRRISASVQKQQQGLLG*SIAISETRILSTSPSPHSNSAQIPC 301
           Q   G HHR PPP  ++      +++  Q+ L     + S   +        S + Q+P 
Sbjct: 148 QLSSGTHHRGPPPAPKSSIDALPTIKITQKHL---KSSDSHCPVCKDEFELKSEAKQMP- 203

Query: 300 KCKRLRSIERIIQYLVRCNYCLTLQSFIP 214
            C  +   + I+ +LV+ N C   +  +P
Sbjct: 204 -CHHIYHSDCIVPWLVQHNSCPVCRKELP 231


>At3g56580.1 68416.m06291 zinc finger (C3HC4-type RING finger)
           family protein contains INTERPRO domain, IPR001841, RING
           finger
          Length = 320

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 21/89 (23%), Positives = 38/89 (42%)
 Frame = -1

Query: 480 QRGGGXHHRAPPPEIRACRRISASVQKQQQGLLG*SIAISETRILSTSPSPHSNSAQIPC 301
           Q   G HHR PPP  ++      +++  Q+ L     + S   +        S + Q+P 
Sbjct: 148 QLSSGTHHRGPPPAPKSSIDALPTIKITQKHL---KSSDSHCPVCKDEFELKSEAKQMP- 203

Query: 300 KCKRLRSIERIIQYLVRCNYCLTLQSFIP 214
            C  +   + I+ +LV+ N C   +  +P
Sbjct: 204 -CHHIYHSDCIVPWLVQHNSCPVCRKELP 231


>At4g12330.1 68417.m01951 cytochrome P450 family protein contains
           Pfam profile:PF00067 cytochrome p450
          Length = 518

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
 Frame = +2

Query: 170 VNYVFIFK-ASLKLDKGMKLCNVKQ*LHLTKYWIIRSIERNRLHLHGICALLL 325
           +N + I K A  +LDK +   N+ +  H+TK   I SI +  L LH    LL+
Sbjct: 334 INKLEIMKRAQQELDKVVGKNNIVEEKHITKLPYILSIMKETLRLHPALPLLI 386


>At5g02180.1 68418.m00139 amino acid transporter family protein
           belongs to INTERPRO:IPR002422 amino acid/polyamine
           transporter, family II
          Length = 550

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 13/41 (31%), Positives = 23/41 (56%)
 Frame = -1

Query: 426 RRISASVQKQQQGLLG*SIAISETRILSTSPSPHSNSAQIP 304
           RR+++S QK+QQ     S++ S ++ L + P P      +P
Sbjct: 97  RRLASSFQKKQQSSFCDSLSSSSSKPLLSQPVPDKEETILP 137


>At2g45520.1 68415.m05661 expressed protein
          Length = 205

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
 Frame = -1

Query: 363 SETRILS--TSPSPHSNSAQIPCKCKRLRSIERII 265
           S  RIL   TSPSPH ++ Q+  K ++L+  E ++
Sbjct: 37  STLRILMNYTSPSPHDSTKQVVEKKEKLKKAEVVV 71


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,662,377
Number of Sequences: 28952
Number of extensions: 231682
Number of successful extensions: 609
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 601
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 608
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 977150592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)