Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021318
         (682 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16D10.04c |dna2||DNA replication endonuclease-helicase Dna2|...    28   1.4  
SPBC646.14c |orc5||origin recognition complex subunit Orc5|Schiz...    27   3.3  
SPAC664.03 |||RNA polymerase II associated Paf1 complex |Schizos...    27   3.3  
SPAC23H4.01c ||SPAP27G11.01|sterol binding ankyrin repeat protei...    27   3.3  
SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr ...    27   3.3  
SPAC5H10.06c |adh4||alcohol dehydrogenase Adh4|Schizosaccharomyc...    27   3.3  
SPAC823.03 |ppk15||serine/threonine protein kinase Ppk15 |Schizo...    27   3.3  
SPAC513.05 |ams1||alpha-mannosidase |Schizosaccharomyces pombe|c...    26   4.4  
SPCC737.07c |||DNA polymerase alpha-associated DNA helicase A |S...    26   5.8  

>SPBC16D10.04c |dna2||DNA replication endonuclease-helicase
            Dna2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1398

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 13/28 (46%), Positives = 19/28 (67%)
 Frame = +1

Query: 178  QLPPIIKNSLDYLNDLSDSVFSDISESN 261
            QLPP++KNS    + LS S+F  +SE +
Sbjct: 1094 QLPPLVKNSRTSKDGLSLSLFKLLSEKH 1121


>SPBC646.14c |orc5||origin recognition complex subunit
           Orc5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 455

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 17/53 (32%), Positives = 28/53 (52%)
 Frame = +1

Query: 88  VMHSDDPVAPVGYLNLKLHLEPKENCDEPLQLPPIIKNSLDYLNDLSDSVFSD 246
           V+HS  P   +G L++ +   P+    E L++      +LD+L+   DSVF D
Sbjct: 155 VLHSH-PAQYLGTLSIAVIFFPQYTQAEILEICQKTPPNLDFLDRSGDSVFED 206


>SPAC664.03 |||RNA polymerase II associated Paf1 complex
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 457

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
 Frame = +3

Query: 312 MKNSAELNPLLTYS-PDKENNLDIIHKLNDSAEVLDNGYVYEQ-TNDDRSSH 461
           M +SAE    L+Y  P +E   +I  K+ND++  +   +VY    N D S H
Sbjct: 241 MPSSAEGEEFLSYYLPSEETAEEIQAKVNDASADVHEPFVYNHFRNFDASMH 292


>SPAC23H4.01c ||SPAP27G11.01|sterol binding ankyrin repeat
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 945

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 22/63 (34%), Positives = 28/63 (44%), Gaps = 4/63 (6%)
 Frame = +3

Query: 321 SAELNPLLTYS---PDKENNLDIIHKLNDSAEVLDNGYVYEQTNDDRS-SHTITDHRSIY 488
           + E N LL++      K    DI HK ND++ +LD        N DRS  HT   H    
Sbjct: 17  TVESNSLLSWQLHVKRKSIKFDIYHKKNDTSSLLDG----SNKNTDRSILHTKRQHTHEA 72

Query: 489 GNK 497
           G K
Sbjct: 73  GIK 75


>SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1337

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 12/20 (60%), Positives = 14/20 (70%)
 Frame = -1

Query: 556 SCHPRVDPFADNPSNKYHPC 497
           S  PR DP AD+PS+ YH C
Sbjct: 884 STQPR-DPDADHPSSLYHIC 902


>SPAC5H10.06c |adh4||alcohol dehydrogenase Adh4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 422

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
 Frame = +1

Query: 76  EKEMVMHSDDPVAP---VGYLNLKLHLEPKENCDEPLQL 183
           E+ + +H  D V P   VG +N  L +  KENCD  + +
Sbjct: 100 EQSITVHLYDGVQPNPTVGNVNQGLEIVKKENCDSMVSI 138


>SPAC823.03 |ppk15||serine/threonine protein kinase Ppk15
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 534

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
 Frame = +3

Query: 312 MKNSAELNPLLTYSPDKENNLDIIHKLNDSAEVLDNGYVYEQTNDDRS-SHTI 467
           +K   ELNPL  ++PD+  N   I   + S   +D       T   R+ SHTI
Sbjct: 435 IKQFLELNPLKRWTPDQAKNHPFITGASFSQYCIDKQKPLLTTQRTRNRSHTI 487


>SPAC513.05 |ams1||alpha-mannosidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1077

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -3

Query: 233 ESLKSFK*SNEFLMIGGSW 177
           E LK +   N+F+ IGGSW
Sbjct: 345 EKLKEYVNQNKFIPIGGSW 363


>SPCC737.07c |||DNA polymerase alpha-associated DNA helicase A
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 660

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 9/35 (25%), Positives = 20/35 (57%)
 Frame = +2

Query: 269 DRNRVYREVRERGKDEEQCRTESVAHVFAGQREQF 373
           +R  +Y+ +RE  KD  +   ++VA++ +  +  F
Sbjct: 333 ERREIYKNIRELRKDYRKYEAKTVANIVSASKVVF 367


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,343,113
Number of Sequences: 5004
Number of extensions: 43819
Number of successful extensions: 149
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 313902888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)