Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021318
         (682 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_1170 + 34663853-34663928,34664038-34664078,34664317-346643...    38   0.007
07_01_1106 - 10187609-10190041,10190292-10191932                       30   2.0  
07_03_1780 - 29465873-29466130,29466236-29466335,29466473-294665...    28   7.9  
06_03_0498 - 21432958-21434245,21434579-21435310,21435502-214357...    28   7.9  
04_03_0890 + 20576843-20578119,20578563-20578806,20578890-20580002     28   7.9  

>02_05_1170 +
           34663853-34663928,34664038-34664078,34664317-34664386,
           34664499-34664647,34664784-34664879,34665406-34665476,
           34665637-34665698,34665778-34665841,34665950-34666034,
           34666129-34666255,34666381-34666454,34666539-34666599,
           34666683-34666771,34666897-34667206,34667763-34667815,
           34668299-34668370,34668648-34668914,34669015-34669047,
           34669163-34669245,34669522-34669594,34669834-34670170,
           34670302-34670633,34670816-34671135,34671261-34671612,
           34671691-34671906
          Length = 1170

 Score = 37.9 bits (84), Expect = 0.007
 Identities = 21/60 (35%), Positives = 35/60 (58%), Gaps = 2/60 (3%)
 Frame = +1

Query: 82  EMVMHSDDPVAPVGYLN-LKLHLEPKENCDEPLQLPPIIKNSLDYLNDLSDSV-FSDISE 255
           E+++HS D +APVG L+ LK HLE K N    +    I + +  YL ++  ++  SD+ +
Sbjct: 662 EVILHSPDSIAPVGILHPLKFHLEHKPNSFGTVGDSAIAQENSSYLYEVDGAIAHSDVEK 721


>07_01_1106 - 10187609-10190041,10190292-10191932
          Length = 1357

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 23/64 (35%), Positives = 34/64 (53%), Gaps = 3/64 (4%)
 Frame = +1

Query: 46  YPVQEK-TDHHEKEMVMHSDDPV--APVGYLNLKLHLEPKENCDEPLQLPPIIKNSLDYL 216
           Y  Q+K T   E+ M     DP+   P    NL L+L+   NC + +QLPP + +SL  L
Sbjct: 327 YSAQDKITRMKEQTMPSSLADPIYLLPTAIRNL-LYLD-LSNCSDIVQLPPSLGSSLHML 384

Query: 217 NDLS 228
           + L+
Sbjct: 385 SALN 388


>07_03_1780 -
           29465873-29466130,29466236-29466335,29466473-29466559,
           29466682-29467000,29467097-29468567
          Length = 744

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
 Frame = -2

Query: 507 TIHVCSRISIDDPLSCATTYHRSSVRIHIRC-LILPHYHLTCV 382
           T  +C    +DDP +  TT   SS R+ I C      YH+ C+
Sbjct: 454 TCAICGSSDLDDPPATTTTQGFSSDRMVISCEQCRREYHVGCM 496


>06_03_0498 -
           21432958-21434245,21434579-21435310,21435502-21435788,
           21435955-21436026,21436130-21436264,21436887-21436925
          Length = 850

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 13/44 (29%), Positives = 21/44 (47%)
 Frame = +2

Query: 251 ANRIE*DRNRVYREVRERGKDEEQCRTESVAHVFAGQREQFRYY 382
           A+ +E   N +   V+  G+D       S+  VFA + E F +Y
Sbjct: 168 ASSVEVIYNEIVAVVQRGGQDANSAHVPSINKVFADENEAFDFY 211


>04_03_0890 + 20576843-20578119,20578563-20578806,20578890-20580002
          Length = 877

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 14/32 (43%), Positives = 20/32 (62%)
 Frame = +2

Query: 464 DNGSSIDIREQTWMVFIGGIVGEGVDTRVATE 559
           D   S + +E+TW+ F+GG  G G + RVA E
Sbjct: 654 DRSRSTEAKEETWLFFLGG-DGHGKE-RVARE 683


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,928,964
Number of Sequences: 37544
Number of extensions: 269853
Number of successful extensions: 714
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 691
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 714
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1721314888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)