Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021318
         (682 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_15331| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.5  
SB_25879| Best HMM Match : WAP (HMM E-Value=1.8)                       29   4.6  
SB_42943| Best HMM Match : WD40 (HMM E-Value=0)                        28   8.0  
SB_31316| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.0  

>SB_15331| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 358

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 21/76 (27%), Positives = 38/76 (50%)
 Frame = +3

Query: 315 KNSAELNPLLTYSPDKENNLDIIHKLNDSAEVLDNGYVYEQTNDDRSSHTITDHRSIYGN 494
           KN+A L  L+    D +N++D  H+ +D  E L     ++    +    T+T  R+++G+
Sbjct: 228 KNNA-LGALMAELGDIDNDIDD-HEDSDDDEFLKLATPFQSVKQEDC--TVTVARTLHGS 283

Query: 495 KHGWYLLEGLSAKGST 542
             GW+  + L    ST
Sbjct: 284 ALGWFSQDSLKLASST 299


>SB_25879| Best HMM Match : WAP (HMM E-Value=1.8)
          Length = 260

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 14/41 (34%), Positives = 18/41 (43%)
 Frame = +3

Query: 411 LDNGYVYEQTNDDRSSHTITDHRSIYGNKHGWYLLEGLSAK 533
           +D     E   D+    +I D R + G KHG    EGL  K
Sbjct: 96  VDEEVTVENLGDNDVDASIRDRRGLLGEKHGCGCQEGLECK 136


>SB_42943| Best HMM Match : WD40 (HMM E-Value=0)
          Length = 273

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +1

Query: 46  YPVQEKTDHHEKEMVMHSDDPVAPVGYLN 132
           Y +QE+T   E + +   D P  P GYLN
Sbjct: 177 YTIQEETHSVEPDQLPSEDQPHWPPGYLN 205


>SB_31316| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 383

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -2

Query: 468 LSCATTYHRSSVRIHIRCLILPHYHL 391
           LSC TT   +  R+ ++CL +P  HL
Sbjct: 54  LSCPTTTSPAKRRVGVQCLAIPALHL 79


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,605,518
Number of Sequences: 59808
Number of extensions: 341484
Number of successful extensions: 869
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 806
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 869
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1757375282
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)