Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021318
         (682 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC066652-1|AAH66652.1|  267|Homo sapiens ATP binding domain 4 pr...    32   1.6  
BC008485-1|AAH08485.2|  259|Homo sapiens ATPBD4 protein protein.       32   1.6  
AK094007-1|BAC04266.1|  267|Homo sapiens .2.2).  protein.              32   1.6  
BC130282-1|AAI30283.1| 1310|Homo sapiens PCLKC protein protein.        30   8.8  
AB047004-1|BAB40777.1| 1310|Homo sapiens protocadherin LKC protein.    30   8.8  

>BC066652-1|AAH66652.1|  267|Homo sapiens ATP binding domain 4
           protein.
          Length = 267

 Score = 32.3 bits (70), Expect = 1.6
 Identities = 16/26 (61%), Positives = 19/26 (73%), Gaps = 1/26 (3%)
 Frame = +1

Query: 82  EMVMHSDDPVAPVGYLN-LKLHLEPK 156
           E+V+HS D  APV YL  L+LHLE K
Sbjct: 225 EVVIHSADAFAPVAYLRFLELHLEDK 250


>BC008485-1|AAH08485.2|  259|Homo sapiens ATPBD4 protein protein.
          Length = 259

 Score = 32.3 bits (70), Expect = 1.6
 Identities = 16/26 (61%), Positives = 19/26 (73%), Gaps = 1/26 (3%)
 Frame = +1

Query: 82  EMVMHSDDPVAPVGYLN-LKLHLEPK 156
           E+V+HS D  APV YL  L+LHLE K
Sbjct: 217 EVVIHSADAFAPVAYLRFLELHLEDK 242


>AK094007-1|BAC04266.1|  267|Homo sapiens .2.2).  protein.
          Length = 267

 Score = 32.3 bits (70), Expect = 1.6
 Identities = 16/26 (61%), Positives = 19/26 (73%), Gaps = 1/26 (3%)
 Frame = +1

Query: 82  EMVMHSDDPVAPVGYLN-LKLHLEPK 156
           E+V+HS D  APV YL  L+LHLE K
Sbjct: 225 EVVIHSADAFAPVAYLRFLELHLEDK 250


>BC130282-1|AAI30283.1| 1310|Homo sapiens PCLKC protein protein.
          Length = 1310

 Score = 29.9 bits (64), Expect = 8.8
 Identities = 17/56 (30%), Positives = 27/56 (48%)
 Frame = +3

Query: 312  MKNSAELNPLLTYSPDKENNLDIIHKLNDSAEVLDNGYVYEQTNDDRSSHTITDHR 479
            M N+   NP+L   P+K+  L+ +   ND   V  N       + D++S  I +HR
Sbjct: 1213 MYNTERANPMLNL-PNKDLGLEYLSPSNDLDSVSVNSLDDNSVDVDKNSQEIKEHR 1267


>AB047004-1|BAB40777.1| 1310|Homo sapiens protocadherin LKC protein.
          Length = 1310

 Score = 29.9 bits (64), Expect = 8.8
 Identities = 17/56 (30%), Positives = 27/56 (48%)
 Frame = +3

Query: 312  MKNSAELNPLLTYSPDKENNLDIIHKLNDSAEVLDNGYVYEQTNDDRSSHTITDHR 479
            M N+   NP+L   P+K+  L+ +   ND   V  N       + D++S  I +HR
Sbjct: 1213 MYNTERANPMLNL-PNKDLGLEYLSPSNDLDSVSVNSLDDNSVDVDKNSQEIKEHR 1267


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 77,144,869
Number of Sequences: 237096
Number of extensions: 1368504
Number of successful extensions: 2719
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2636
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2719
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 7727256732
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)