Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021318
(682 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC006627-6|AAK85462.3| 249|Caenorhabditis elegans Hypothetical ... 38 0.005
S42187-1|AAB22845.1| 1475|Caenorhabditis elegans pTra2A protein. 31 1.0
M91371-1|AAA28150.1| 1475|Caenorhabditis elegans membrane protei... 31 1.0
AC006608-1|AAF39755.1| 1475|Caenorhabditis elegans Transformer :... 31 1.0
Z70756-3|CAC42337.1| 2514|Caenorhabditis elegans Hypothetical pr... 30 1.8
Z70756-2|CAA94790.2| 2531|Caenorhabditis elegans Hypothetical pr... 30 1.8
AB018598-1|BAA33886.1| 2514|Caenorhabditis elegans ATM-like prot... 30 1.8
Z75550-15|CAA99931.2| 2003|Caenorhabditis elegans Hypothetical p... 27 9.4
Z75538-4|CAA99841.2| 2003|Caenorhabditis elegans Hypothetical pr... 27 9.4
U49263-1|AAC47238.1| 2003|Caenorhabditis elegans non-muscle myos... 27 9.4
>AC006627-6|AAK85462.3| 249|Caenorhabditis elegans Hypothetical
protein E01A2.5 protein.
Length = 249
Score = 38.3 bits (85), Expect = 0.005
Identities = 18/28 (64%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
Frame = +1
Query: 76 EKEMVMHSDDPVAPVGYLNL-KLHLEPK 156
E E V H DDP+APV YL L K+HLE K
Sbjct: 222 ETETVTHQDDPIAPVFYLRLKKMHLEDK 249
>S42187-1|AAB22845.1| 1475|Caenorhabditis elegans pTra2A protein.
Length = 1475
Score = 30.7 bits (66), Expect = 1.0
Identities = 13/36 (36%), Positives = 23/36 (63%)
Frame = +1
Query: 100 DDPVAPVGYLNLKLHLEPKENCDEPLQLPPIIKNSL 207
D+P+ PVG L + H+ P+E +PL PP +++ +
Sbjct: 1328 DEPLPPVGRLYIVEHVLPEEYRRDPLTEPPSMEDCI 1363
>M91371-1|AAA28150.1| 1475|Caenorhabditis elegans membrane protein
protein.
Length = 1475
Score = 30.7 bits (66), Expect = 1.0
Identities = 13/36 (36%), Positives = 23/36 (63%)
Frame = +1
Query: 100 DDPVAPVGYLNLKLHLEPKENCDEPLQLPPIIKNSL 207
D+P+ PVG L + H+ P+E +PL PP +++ +
Sbjct: 1328 DEPLPPVGRLYIVEHVLPEEYRRDPLTEPPSMEDCI 1363
>AC006608-1|AAF39755.1| 1475|Caenorhabditis elegans Transformer : xx
animals transformedinto males protein 2, isoform a
protein.
Length = 1475
Score = 30.7 bits (66), Expect = 1.0
Identities = 13/36 (36%), Positives = 23/36 (63%)
Frame = +1
Query: 100 DDPVAPVGYLNLKLHLEPKENCDEPLQLPPIIKNSL 207
D+P+ PVG L + H+ P+E +PL PP +++ +
Sbjct: 1328 DEPLPPVGRLYIVEHVLPEEYRRDPLTEPPSMEDCI 1363
>Z70756-3|CAC42337.1| 2514|Caenorhabditis elegans Hypothetical
protein T06E4.3b protein.
Length = 2514
Score = 29.9 bits (64), Expect = 1.8
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = +2
Query: 560 DAMNKLISLLDSESMHLTDVCSVNIIHEEPGRVCFVE*RLC 682
D N LL++ S+ L D+ + + IHE P R+C +C
Sbjct: 303 DDANDKFGLLENFSLLLLDLSTNHDIHEFPARLCMTASEIC 343
>Z70756-2|CAA94790.2| 2531|Caenorhabditis elegans Hypothetical
protein T06E4.3a protein.
Length = 2531
Score = 29.9 bits (64), Expect = 1.8
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = +2
Query: 560 DAMNKLISLLDSESMHLTDVCSVNIIHEEPGRVCFVE*RLC 682
D N LL++ S+ L D+ + + IHE P R+C +C
Sbjct: 303 DDANDKFGLLENFSLLLLDLSTNHDIHEFPARLCMTASEIC 343
>AB018598-1|BAA33886.1| 2514|Caenorhabditis elegans ATM-like protein
protein.
Length = 2514
Score = 29.9 bits (64), Expect = 1.8
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = +2
Query: 560 DAMNKLISLLDSESMHLTDVCSVNIIHEEPGRVCFVE*RLC 682
D N LL++ S+ L D+ + + IHE P R+C +C
Sbjct: 303 DDANDKFGLLENFSLLLLDLSTNHDIHEFPARLCMTASEIC 343
>Z75550-15|CAA99931.2| 2003|Caenorhabditis elegans Hypothetical
protein F20G4.3 protein.
Length = 2003
Score = 27.5 bits (58), Expect = 9.4
Identities = 20/63 (31%), Positives = 36/63 (57%), Gaps = 3/63 (4%)
Frame = +1
Query: 67 DHHEKEMVMHSDDPVAPVGYLNLKLH-LEPKENCDEPLQLPPIIKN-SLD-YLNDLSDSV 237
DH +EM + DD +A + +N +L ++ ++ DE L + KN SLD L++L+++
Sbjct: 1275 DHKMREMQSNLDDLMAKLSKMNNELESIQKAKSADETLNSNLLKKNASLDMQLSELTEAS 1334
Query: 238 FSD 246
D
Sbjct: 1335 EED 1337
>Z75538-4|CAA99841.2| 2003|Caenorhabditis elegans Hypothetical protein
F20G4.3 protein.
Length = 2003
Score = 27.5 bits (58), Expect = 9.4
Identities = 20/63 (31%), Positives = 36/63 (57%), Gaps = 3/63 (4%)
Frame = +1
Query: 67 DHHEKEMVMHSDDPVAPVGYLNLKLH-LEPKENCDEPLQLPPIIKN-SLD-YLNDLSDSV 237
DH +EM + DD +A + +N +L ++ ++ DE L + KN SLD L++L+++
Sbjct: 1275 DHKMREMQSNLDDLMAKLSKMNNELESIQKAKSADETLNSNLLKKNASLDMQLSELTEAS 1334
Query: 238 FSD 246
D
Sbjct: 1335 EED 1337
>U49263-1|AAC47238.1| 2003|Caenorhabditis elegans non-muscle myosin
heavy chain II protein.
Length = 2003
Score = 27.5 bits (58), Expect = 9.4
Identities = 20/63 (31%), Positives = 36/63 (57%), Gaps = 3/63 (4%)
Frame = +1
Query: 67 DHHEKEMVMHSDDPVAPVGYLNLKLH-LEPKENCDEPLQLPPIIKN-SLD-YLNDLSDSV 237
DH +EM + DD +A + +N +L ++ ++ DE L + KN SLD L++L+++
Sbjct: 1275 DHKMREMQSNLDDLMAKLSKMNNELESIQKAKSADETLNSNLLKKNASLDMQLSELTEAS 1334
Query: 238 FSD 246
D
Sbjct: 1335 EED 1337
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,025,953
Number of Sequences: 27780
Number of extensions: 246764
Number of successful extensions: 746
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 731
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 746
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1550199966
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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