Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021318
         (682 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g04480.1 68416.m00475 endoribonuclease L-PSP family protein c...    32   0.31 
At5g67070.1 68418.m08457 rapid alkalinization factor (RALF) fami...    30   1.2  
At3g12810.1 68416.m01598 SNF2 domain-containing protein / helica...    29   3.8  
At4g19510.2 68417.m02870 disease resistance protein (TIR-NBS-LRR...    28   5.0  
At4g19510.1 68417.m02869 disease resistance protein (TIR-NBS-LRR...    28   5.0  
At2g28060.1 68415.m03406 protein kinase-related similar to GAL83...    28   5.0  
At3g15560.1 68416.m01972 expressed protein                             28   6.6  

>At3g04480.1 68416.m00475 endoribonuclease L-PSP family protein
           contains Pfam domain PF01902: Domain of unknown function
          Length = 715

 Score = 32.3 bits (70), Expect = 0.31
 Identities = 16/32 (50%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
 Frame = +1

Query: 76  EKEMVMHSDDPVAPVGYLN-LKLHLEPKENCD 168
           E ++V+HS D +APVG L+    HLE K N D
Sbjct: 223 EYQVVLHSPDSIAPVGVLHPSTFHLEKKGNPD 254


>At5g67070.1 68418.m08457 rapid alkalinization factor (RALF) family
           protein similar to RALF precursor [Nicotiana tabacum]
           GI:16566316
          Length = 129

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
 Frame = +3

Query: 333 NPLLTYSPDKENNLDIIHKLNDSAEVLDNGYVYEQTNDDRSSHTITDHRSIYGNKHGWYL 512
           NP LT  PD  +   I H  +D  +++D    +E T +D     +TD RS+Y  +  +Y+
Sbjct: 29  NPSLTLLPDGFD-WPISH--SDEFDIIDGEESFEVTEEDDG---VTDRRSLYWRRTKYYI 82

Query: 513 LEG-LSA 530
             G LSA
Sbjct: 83  SYGALSA 89


>At3g12810.1 68416.m01598 SNF2 domain-containing protein / helicase
            domain-containing protein similar to transcriptional
            activator SRCAP [Homo sapiens] GI:5106572; contains Pfam
            profiles PF00271: Helicase conserved C-terminal domain,
            PF00176: SNF2 family N-terminal domain
          Length = 2055

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = +1

Query: 115  PVGYLNLKLHLE-PKENCDEPLQLPPIIKNSLDYLNDLS 228
            P+  L L+L LE P+ N D   Q PP+I  S+D  + L+
Sbjct: 1866 PINKLGLELTLEFPRGNDDSLNQFPPMISLSIDGSDSLN 1904


>At4g19510.2 68417.m02870 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1049

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = +1

Query: 157 ENCDEPLQLPPIIKNSLDYLNDLSDSVFSD 246
           EN  EP  L  I+KN+   LN+LS  V  D
Sbjct: 161 ENSSEPDFLDEIVKNTFRMLNELSPCVIPD 190


>At4g19510.1 68417.m02869 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1049

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = +1

Query: 157 ENCDEPLQLPPIIKNSLDYLNDLSDSVFSD 246
           EN  EP  L  I+KN+   LN+LS  V  D
Sbjct: 161 ENSSEPDFLDEIVKNTFRMLNELSPCVIPD 190


>At2g28060.1 68415.m03406 protein kinase-related similar to GAL83
           protein [Solanum tuberosum] GI:5702015; contains Pfam
           profile PF04739: 5'-AMP-activated protein kinase, beta
           subunit, complex-interacting region; supporting cDNA
           gi|22652763|gb|AF491295.1|
          Length = 114

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 14/50 (28%), Positives = 27/50 (54%)
 Frame = +1

Query: 58  EKTDHHEKEMVMHSDDPVAPVGYLNLKLHLEPKENCDEPLQLPPIIKNSL 207
           +  D HE   V+  + PV+PV   N  ++   ++   +P  +PP +++SL
Sbjct: 4   QNPDDHEDTTVVGFEVPVSPVSSYN-NVYSSTEDETRDPPAVPPHLQHSL 52


>At3g15560.1 68416.m01972 expressed protein
          Length = 471

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 19/68 (27%), Positives = 30/68 (44%)
 Frame = +1

Query: 19  RVRNLHTXXYPVQEKTDHHEKEMVMHSDDPVAPVGYLNLKLHLEPKENCDEPLQLPPIIK 198
           R RNL        E+T  H++  V   ++  A      +K H E +E  +E  + P + +
Sbjct: 180 RDRNLSLYLPGTSEETSSHKELRVHFEEEHKAAASEAEIKKHCEIEEE-EEEQKTPEVSE 238

Query: 199 NSLDYLND 222
            SL  L D
Sbjct: 239 KSLVALED 246


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,135,840
Number of Sequences: 28952
Number of extensions: 225969
Number of successful extensions: 667
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 650
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 667
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1438152744
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)