Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021317
         (669 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_P41710 Cluster: Immediate-early protein IE-0; n=13; Nuc...   245   7e-64
UniRef50_Q0GY85 Cluster: Putative uncharacterized protein; n=1; ...    84   3e-15
UniRef50_Q8B9C2 Cluster: Putative uncharacterized protein; n=1; ...    81   3e-14
UniRef50_Q4KT70 Cluster: Exon-0; n=3; Nucleopolyhedrovirus|Rep: ...    45   0.002
UniRef50_Q0N487 Cluster: IE-0; n=1; Clanis bilineata nucleopolyh...    42   0.013
UniRef50_Q9IBQ9 Cluster: ORF138 ie0; n=6; Nucleopolyhedrovirus|R...    38   0.22 
UniRef50_A0EYR5 Cluster: Ie-0; n=1; Ecotropis obliqua NPV|Rep: I...    38   0.29 
UniRef50_O36453 Cluster: Immediate-early protein IE-0; n=1; Lyma...    36   0.67 
UniRef50_Q77KA3 Cluster: Ie-0; n=5; Nucleopolyhedrovirus|Rep: Ie...    33   4.7  
UniRef50_A1YRH0 Cluster: Mv-ORF108 peptide; n=1; Maruca vitrata ...    33   4.7  

>UniRef50_P41710 Cluster: Immediate-early protein IE-0; n=13;
           Nucleopolyhedrovirus|Rep: Immediate-early protein IE-0 -
           Autographa californica nuclear polyhedrosis virus
           (AcMNPV)
          Length = 261

 Score =  245 bits (600), Expect = 7e-64
 Identities = 112/125 (89%), Positives = 114/125 (91%)
 Frame = +3

Query: 255 SAAFAIIDDKHLEMYKYRIENKFFYYYDQCADIAKPDRLPDDDGACCHHFIFDAQRIIQC 434
           SAAFA+IDDKHLEMYK+RIENKFFYYYDQCADIAKPDRLPDDDGACCHHFIFDAQRIIQC
Sbjct: 66  SAAFAMIDDKHLEMYKHRIENKFFYYYDQCADIAKPDRLPDDDGACCHHFIFDAQRIIQC 125

Query: 435 IKEIEGAYGVRDRGNVIVFYPYLKHCETR*S*FKNSFACCFKNINSMQMYVNELISNCLL 614
           IKEIE AYGVRDRGNVIVFYPYLK         KNSFACCFK INSMQMYVNELISNCLL
Sbjct: 126 IKEIESAYGVRDRGNVIVFYPYLKQLRDALKLIKNSFACCFKIINSMQMYVNELISNCLL 185

Query: 615 FIEKL 629
           FIEKL
Sbjct: 186 FIEKL 190



 Score =  136 bits (330), Expect = 3e-31
 Identities = 63/65 (96%), Positives = 64/65 (98%)
 Frame = +1

Query: 61  MIRTSSHVLNVQENIMTSNCASSPYSCEATSACAEAQQVMIDNFVFFHMYTADIQIDAKV 240
           MIRTSSHVLNVQENIMTSNCASSPYSCEATSACAEAQQVMIDNFVFFHMY ADIQIDAK+
Sbjct: 1   MIRTSSHVLNVQENIMTSNCASSPYSCEATSACAEAQQVMIDNFVFFHMYNADIQIDAKL 60

Query: 241 QCGVR 255
           QCGVR
Sbjct: 61  QCGVR 65


>UniRef50_Q0GY85 Cluster: Putative uncharacterized protein; n=1;
           Plutella xylostella multiple nucleopolyhedrovirus|Rep:
           Putative uncharacterized protein - Plutella xylostella
           multiple nucleopolyhedrovirus
          Length = 88

 Score = 83.8 bits (198), Expect = 3e-15
 Identities = 37/39 (94%), Positives = 37/39 (94%)
 Frame = -3

Query: 133 MAMTHSLTSLYFPGRSARDCWFLSCCVARYQSLILSSAQ 17
           MAMTHSLTSLYFPGRSARDCWFLSCCVARYQ LILS AQ
Sbjct: 1   MAMTHSLTSLYFPGRSARDCWFLSCCVARYQLLILSGAQ 39


>UniRef50_Q8B9C2 Cluster: Putative uncharacterized protein; n=1;
           Rachiplusia ou MNPV|Rep: Putative uncharacterized
           protein - Rachiplusia ou multiple nucleopolyhedrovirus
           (RoMNPV)
          Length = 113

 Score = 80.6 bits (190), Expect = 3e-14
 Identities = 35/39 (89%), Positives = 36/39 (92%)
 Frame = -3

Query: 133 MAMTHSLTSLYFPGRSARDCWFLSCCVARYQSLILSSAQ 17
           MAMTH+LTSLYFPGRSARDCWFLSCCVARYQ LIL  AQ
Sbjct: 1   MAMTHNLTSLYFPGRSARDCWFLSCCVARYQLLILCDAQ 39


>UniRef50_Q4KT70 Cluster: Exon-0; n=3; Nucleopolyhedrovirus|Rep:
           Exon-0 - Chrysodeixis chalcites nucleopolyhedrovirus
          Length = 315

 Score = 44.8 bits (101), Expect = 0.002
 Identities = 32/124 (25%), Positives = 61/124 (49%)
 Frame = +3

Query: 258 AAFAIIDDKHLEMYKYRIENKFFYYYDQCADIAKPDRLPDDDGACCHHFIFDAQRIIQCI 437
           A+F +ID+   + Y  +I+ K   + D   DI    R+P+D   C H+ I +  +I+  +
Sbjct: 109 ASFNVIDEIFQQTYNEKID-KILAFVDDTNDI----RIPND--RCLHYLIAEIGKIVNVL 161

Query: 438 KEIEGAYGVRDRGNVIVFYPYLKHCETR*S*FKNSFACCFKNINSMQMYVNELISNCLLF 617
           + +      +   ++ VF PYLK        F N F CC K + +  + ++ +I++ L  
Sbjct: 162 QHVNRMS--KFEYSMYVFMPYLKQIRKTIILFVNDF-CCKKLVENYLLTLDAMIADSLKL 218

Query: 618 IEKL 629
           +E +
Sbjct: 219 LETI 222


>UniRef50_Q0N487 Cluster: IE-0; n=1; Clanis bilineata
           nucleopolyhedrosis virus|Rep: IE-0 - Clanis bilineata
           nucleopolyhedrosis virus
          Length = 281

 Score = 41.9 bits (94), Expect = 0.013
 Identities = 34/125 (27%), Positives = 54/125 (43%), Gaps = 1/125 (0%)
 Frame = +3

Query: 258 AAFAIIDDKHLEMYKYRIENKFFYYYDQCADIAKPDRLPDDDGACCHHFIFDAQRIIQCI 437
           A FAI+D  HL+M+  +I+       D  A     D +      C HH I    RI+Q +
Sbjct: 76  AVFAILDRYHLQMFNVKID-------DILALREHEDDVVFSKTECVHHLIAKLNRIVQVL 128

Query: 438 K-EIEGAYGVRDRGNVIVFYPYLKHCETR*S*FKNSFACCFKNINSMQMYVNELISNCLL 614
              ++    V    NV +F PYL+  +   S F N + CC   +      V+ L+     
Sbjct: 129 LFVVQQEMYVH---NVYIFLPYLRQLKQMLSNFVNDY-CCSSVVQKCIQSVDSLMQRSTK 184

Query: 615 FIEKL 629
           ++E +
Sbjct: 185 YLEAI 189


>UniRef50_Q9IBQ9 Cluster: ORF138 ie0; n=6; Nucleopolyhedrovirus|Rep:
           ORF138 ie0 - Spodoptera exigua MNPV
          Length = 244

 Score = 37.9 bits (84), Expect = 0.22
 Identities = 24/98 (24%), Positives = 47/98 (47%)
 Frame = +3

Query: 258 AAFAIIDDKHLEMYKYRIENKFFYYYDQCADIAKPDRLPDDDGACCHHFIFDAQRIIQCI 437
           AAF II D + + Y   ++ +   + +   D++    +P D   C H+ I D + ++  +
Sbjct: 45  AAFKIIQDTYQQSYNCDLD-ELLVFRENDDDVSSS--IPRD--RCVHYLINDIKNVLDVL 99

Query: 438 KEIEGAYGVRDRGNVIVFYPYLKHCETR*S*FKNSFAC 551
           + ++     + + N+ +F PY+K        FKN F C
Sbjct: 100 EHLKSQ--PKFQYNMYIFMPYVKQIMVINDMFKNDFCC 135


>UniRef50_A0EYR5 Cluster: Ie-0; n=1; Ecotropis obliqua NPV|Rep: Ie-0
           - Ecotropis obliqua NPV
          Length = 252

 Score = 37.5 bits (83), Expect = 0.29
 Identities = 37/127 (29%), Positives = 54/127 (42%), Gaps = 2/127 (1%)
 Frame = +3

Query: 255 SAAFAIIDDKHLEMYKYRIENKFFYYYDQCADIAKPDRLPDDDGACCHHFIFDAQRIIQC 434
           S AF  +  +H +M+   I  +   Y +   DI     L   D  C HH I   ++I + 
Sbjct: 56  SKAFDALQRQHYKMFHEEIV-EILRYKENDDDI-----LVSTD-MCAHHLI---EKISKI 105

Query: 435 IKEIEGAYGVRD--RGNVIVFYPYLKHCETR*S*FKNSFACCFKNINSMQMYVNELISNC 608
           +K IE    V D  R  + VF PY K   T    FKN + CC   +     Y+ +L+ + 
Sbjct: 106 VKTIESMSNVDDQYRYCMFVFVPYAKQLLTILECFKNDY-CCKNVVQQSLEYLQKLLQDS 164

Query: 609 LLFIEKL 629
               E L
Sbjct: 165 RQTFETL 171


>UniRef50_O36453 Cluster: Immediate-early protein IE-0; n=1;
           Lymantria dispar MNPV|Rep: Immediate-early protein IE-0
           - Lymantria dispar multicapsid nuclear polyhedrosis
           virus (LdMNPV)
          Length = 258

 Score = 36.3 bits (80), Expect = 0.67
 Identities = 31/117 (26%), Positives = 51/117 (43%)
 Frame = +3

Query: 255 SAAFAIIDDKHLEMYKYRIENKFFYYYDQCADIAKPDRLPDDDGACCHHFIFDAQRIIQC 434
           +A F  ID+ H +MY   IE    +  D  A ++  DR       C HH I   +R++  
Sbjct: 58  TAVFQWIDEHHRKMYDCPIEPPLRFTDD--AHLSA-DR-------CWHHLIGKLERVVSV 107

Query: 435 IKEIEGAYGVRDRGNVIVFYPYLKHCETR*S*FKNSFACCFKNINSMQMYVNELISN 605
           ++ +      R   NV VF PY K        F++ + CC   +      ++E I++
Sbjct: 108 LRAMRAMS--RFEHNVFVFLPYCKRLRALVELFRHDY-CCQSTVAGCARALDETIAD 161


>UniRef50_Q77KA3 Cluster: Ie-0; n=5; Nucleopolyhedrovirus|Rep: Ie-0
           - Helicoverpa armigera NPV
          Length = 285

 Score = 33.5 bits (73), Expect = 4.7
 Identities = 27/117 (23%), Positives = 51/117 (43%), Gaps = 2/117 (1%)
 Frame = +3

Query: 258 AAFAIIDDKHLEMYKYRIENKFFYYYDQCADIAKPDRLPDDDGACCHHFIFDAQRIIQCI 437
           AAF I+ D++ + YK  ++     YY + ++      +  D+  C H  +   Q++++ I
Sbjct: 76  AAFLIVLDEYKKQYKNNLDKHSVLYYKETSESV----ITLDEDQCHHTLLPIIQQLLKTI 131

Query: 438 KEIEGAYG--VRDRGNVIVFYPYLKHCETR*S*FKNSFACCFKNINSMQMYVNELIS 602
             +       V       +F PYLK+       F+    CC K    +Q  +N L++
Sbjct: 132 CYLMNFSDDEVNYVKQKFIFLPYLKYLNKILKLFQYD-KCCAKLTKQLQAQLNTLLT 187


>UniRef50_A1YRH0 Cluster: Mv-ORF108 peptide; n=1; Maruca vitrata
          MNPV|Rep: Mv-ORF108 peptide - Maruca vitrata MNPV
          Length = 50

 Score = 33.5 bits (73), Expect = 4.7
 Identities = 13/16 (81%), Positives = 13/16 (81%)
 Frame = -3

Query: 97 PGRSARDCWFLSCCVA 50
          P RSARDCWFLSC  A
Sbjct: 5  PERSARDCWFLSCYFA 20


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 629,788,020
Number of Sequences: 1657284
Number of extensions: 12527426
Number of successful extensions: 32895
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 31629
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32880
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 51239674196
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)