Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021317
         (669 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3H8.04 |||chromosome segregation protein|Schizosaccharomyces...    29   0.80 
SPBC32H8.06 |mug93||TPR repeat protein, meiotically spliced|Schi...    27   1.8  
SPBC146.04 |||sulfhydryl oxidase |Schizosaccharomyces pombe|chr ...    26   4.3  
SPAC1F7.07c |fip1||iron permease Fip1|Schizosaccharomyces pombe|...    26   5.6  
SPBC409.11 |meu18||sequence orphan|Schizosaccharomyces pombe|chr...    25   7.5  

>SPAC3H8.04 |||chromosome segregation protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 338

 Score = 28.7 bits (61), Expect = 0.80
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = +3

Query: 396 HHFIFDAQRIIQCIKEIEGAYG 461
           HH+++D+QRII   + + G YG
Sbjct: 302 HHYLYDSQRIIFVQQSLGGLYG 323


>SPBC32H8.06 |mug93||TPR repeat protein, meiotically
           spliced|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 383

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 12/49 (24%), Positives = 22/49 (44%)
 Frame = -1

Query: 378 HREDGRVWQCRHIDHSNKKIYSLFYTCTFPNVYRQLLQTRPTHAALHLC 232
           +RE    WQ RH+  ++ +   +     +PN+ R  +  +  H    LC
Sbjct: 125 YRECAETWQLRHLRVASSQQLPVGLRKQYPNIIRGKIWWKKVHDNCQLC 173


>SPBC146.04 |||sulfhydryl oxidase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 192

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 14/41 (34%), Positives = 19/41 (46%)
 Frame = -1

Query: 123 RTV*RHYIFLDVQHVTAGSYHVALLVINHLYYPARSKRARA 1
           R + RHY+F     +  G Y V L  I  ++ P  S R  A
Sbjct: 93  RDILRHYLFSSAITMPCGEYSVELQKILDVHPPQTSSRKAA 133


>SPAC1F7.07c |fip1||iron permease Fip1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 397

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 12/41 (29%), Positives = 24/41 (58%)
 Frame = -2

Query: 383 VVIGKTVGFGNVGTLIIVIKKFILYSILVHFQMFIVNYCKR 261
           ++    +G+ N GT   ++  +I+Y + V F MF++ Y +R
Sbjct: 277 MIFNAILGWNNTGTYGSILS-YIIYWLFVAFIMFLMWYKER 316


>SPBC409.11 |meu18||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 553

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 18/64 (28%), Positives = 27/64 (42%)
 Frame = +1

Query: 40  IDNEQRNMIRTSSHVLNVQENIMTSNCASSPYSCEATSACAEAQQVMIDNFVFFHMYTAD 219
           I N   N  R   +  N+QE I  + C  S  + E T  CA+  +   ++ V        
Sbjct: 176 IVNFTSNPNRYRFYETNMQELIRKTICEKSDKAIEKTFLCAQLFKTFCEDGVLQTFQPGF 235

Query: 220 IQID 231
           IQ+D
Sbjct: 236 IQLD 239


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,681,931
Number of Sequences: 5004
Number of extensions: 55755
Number of successful extensions: 143
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)